Gene annotation
Transcriptome id Sobic.003G244900.1
Synonym Sb03g030120
Functional annotation RIPER3 - Ripening-related family protein precursor, putative, expressed
UniProt C5XFC5
Pfam -
Panther DB PTHR31836 PTHR31836:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g34760.1 : RIPER3 - Ripening-related family protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a009513 , Zm00025a009514 , Zm00025a057224
Brachypodium -
Barley HORVU1Hr1G044040.2 , HORVU1Hr1G044040.1 , HORVU5Hr1G125850.1 , HORVU1Hr1G044320.2 , HORVU1Hr1G044320.3 , HORVU5Hr1G125810.1 , HORVU5Hr1G125810.2 , HORVU1Hr1G044320.4 , HORVU1Hr1G044320.1 , HORVU6Hr1G003460.2 , HORVU6Hr1G003460.1
Wheat TraesCS6A02G332900 , TraesCS6B02G026300 , TraesCS6A02G092800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G328550 - K14411: RNA-binding protein Musashi
2 Sobic.004G149466 - -
3 Sobic.003G067700 expressed protein -
4 Sobic.005G158700 - -
5 Sobic.006G221700 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.004G017600 expressed protein -
7 Sobic.001G102150 - -
8 Sobic.002G090100 - -
9 Sobic.002G090100 - -
10 Sobic.002G090100 - -
11 Sobic.002G090100 - -
12 Sobic.002G090100 - -
13 Sobic.002G090100 - -
14 Sobic.003G002501 - -
15 Sobic.005G158801 - -
16 Sobic.001G381400 expressed protein -
17 Sobic.007G159100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed -
18 Sobic.002G390000 dirigent, putative, expressed -
19 Sobic.002G102132 - -
20 Sobic.002G238600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic003G244900 Sobic003G244900 Sobic002G328550 Sobic002G328550 Sobic003G244900--Sobic002G328550 Sobic004G149466 Sobic004G149466 Sobic003G244900--Sobic004G149466 Sobic003G067700 Sobic003G067700 Sobic003G244900--Sobic003G067700 Sobic005G158700 Sobic005G158700 Sobic003G244900--Sobic005G158700 Sobic006G221700 Sobic006G221700 Sobic003G244900--Sobic006G221700 Sobic004G017600 Sobic004G017600 Sobic003G244900--Sobic004G017600 Sobic001G102150 Sobic001G102150 Sobic003G244900--Sobic001G102150 Sobic002G090100 Sobic002G090100 Sobic003G244900--Sobic002G090100 Sobic002G328550--Sobic003G244900 Sobic002G328550--Sobic003G067700 Sobic002G328550--Sobic004G149466 Sobic003G331500 Sobic003G331500 Sobic002G328550--Sobic003G331500 Sobic002G328550--Sobic006G221700 Sobic003G002501 Sobic003G002501 Sobic002G328550--Sobic003G002501 Sobic002G328550--Sobic005G158700 Sobic002G328550--Sobic004G017600 Sobic005G158801 Sobic005G158801 Sobic002G328550--Sobic005G158801 Sobic004G149466--Sobic006G221700 Sobic004G149466--Sobic003G244900 Sobic005G042300 Sobic005G042300 Sobic004G149466--Sobic005G042300 Sobic005G125800 Sobic005G125800 Sobic004G149466--Sobic005G125800 Sobic007G062700 Sobic007G062700 Sobic004G149466--Sobic007G062700 Sobic002G143700 Sobic002G143700 Sobic004G149466--Sobic002G143700 Sobic010G049800 Sobic010G049800 Sobic004G149466--Sobic010G049800 Sobic002G277432 Sobic002G277432 Sobic004G149466--Sobic002G277432 Sobic005G176500 Sobic005G176500 Sobic004G149466--Sobic005G176500 Sobic003G067800 Sobic003G067800 Sobic003G067700--Sobic003G067800 Sobic003G067700--Sobic003G244900 Sobic001G488000 Sobic001G488000 Sobic003G067700--Sobic001G488000 Sobic009G131400 Sobic009G131400 Sobic003G067700--Sobic009G131400 Sobic007G034600 Sobic007G034600 Sobic003G067700--Sobic007G034600 Sobic007G176600 Sobic007G176600 Sobic003G067700--Sobic007G176600 Sobic001G447100 Sobic001G447100 Sobic003G067700--Sobic001G447100 Sobic003G067700--Sobic003G002501 Sobic004G067900 Sobic004G067900 Sobic003G067700--Sobic004G067900 Sobic005G158700--Sobic005G158801 Sobic004G132800 Sobic004G132800 Sobic005G158700--Sobic004G132800 Sobic001G197300 Sobic001G197300 Sobic005G158700--Sobic001G197300 Sobic005G158700--Sobic003G244900 Sobic010G136400 Sobic010G136400 Sobic005G158700--Sobic010G136400 Sobic006G063400 Sobic006G063400 Sobic005G158700--Sobic006G063400 Sobic007G100032 Sobic007G100032 Sobic005G158700--Sobic007G100032 Sobic007G101900 Sobic007G101900 Sobic005G158700--Sobic007G101900 Sobic006G206500 Sobic006G206500 Sobic005G158700--Sobic006G206500 Sobic006G221700--Sobic004G149466 Sobic002G044100 Sobic002G044100 Sobic006G221700--Sobic002G044100 Sobic006G221700--Sobic003G002501 Sobic006G221700--Sobic003G244900 Sobic006G221700--Sobic003G067700 Sobic006G151001 Sobic006G151001 Sobic006G221700--Sobic006G151001 Sobic006G221700--Sobic010G049800 Sobic004G068000 Sobic004G068000 Sobic006G221700--Sobic004G068000 Sobic002G021132 Sobic002G021132 Sobic006G221700--Sobic002G021132 Sobic004G017600--Sobic005G158801 Sobic005G064200 Sobic005G064200 Sobic004G017600--Sobic005G064200 Sobic004G017600--Sobic006G206500 Sobic004G017600--Sobic003G244900 Sobic004G017600--Sobic005G158700 Sobic010G037200 Sobic010G037200 Sobic004G017600--Sobic010G037200 Sobic002G308400 Sobic002G308400 Sobic004G017600--Sobic002G308400 Sobic010G198800 Sobic010G198800 Sobic004G017600--Sobic010G198800 Sobic007G194100 Sobic007G194100 Sobic004G017600--Sobic007G194100 Sobic001G102150--Sobic002G090100 Sobic002G238600 Sobic002G238600 Sobic001G102150--Sobic002G238600 Sobic001G381400 Sobic001G381400 Sobic001G102150--Sobic001G381400 Sobic002G390000 Sobic002G390000 Sobic001G102150--Sobic002G390000 Sobic002G090100--Sobic002G090100 Sobic002G090100--Sobic001G381400 Sobic007G159100 Sobic007G159100 Sobic002G090100--Sobic007G159100 Sobic002G102132 Sobic002G102132 Sobic002G090100--Sobic002G102132 Sobic004G263100 Sobic004G263100 Sobic002G090100--Sobic004G263100
Octagon: transcription factors


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