Gene annotation
Transcriptome id Sobic.001G508000.1
Synonym Sb01g047410
Functional annotation cell division control protein 48 homolog E, putative, expressed
UniProt C5WYU4
Pfam PF02933 PF07724 PF05496 PF02359
Panther DB PTHR23077 PTHR23077:SF83
NCBI CDD -
KEGG Orthology K13525; VCP, transitional endoplasmic reticulum ATPase
Gene Ontology GO:0005524; ATP binding GO:0009378four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT5G03340 : ATPase, AAA-type, CDC48 protein
RAP-DB (Rice) LOC_Os10g30580.1 : cell division control protein 48 homolog E, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23711
Barley HORVU3Hr1G029450.3 , HORVU3Hr1G029450.2 , HORVU3Hr1G029450.1 , HORVU0Hr1G006340.1 , HORVU4Hr1G072010.4 , HORVU4Hr1G072010.7 , HORVU4Hr1G072010.2 , HORVU4Hr1G072010.3 , HORVU4Hr1G072010.1 , HORVU2Hr1G011690.5 , HORVU2Hr1G011690.4 , HORVU2Hr1G011690.3 , HORVU2Hr1G011690.2 , HORVU2Hr1G011690.1 , HORVU3Hr1G029440.1
Wheat TraesCS4D02G267800 , TraesCS2A02G060000 , TraesCS3A02G145000 , TraesCS3B02G171300 , TraesCS6D02G360700 , TraesCS1D02G340100 , TraesCS4B02G268400 , TraesCS1A02G222100 , TraesCS4D02G267600 , TraesCS4D02G267600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G177500 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
2 Sobic.003G399166 - -
3 Sobic.001G192750 - -
4 Sobic.005G163450 - -
5 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
6 Sobic.002G380750 - -
7 Sobic.003G291050 - -
8 Sobic.010G158601 - -
9 Sobic.009G066850 - -
10 Sobic.009G168700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
11 Sobic.001G084200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
13 Sobic.006G115400 ZOS4-08 - C2H2 zinc finger protein, expressed -
14 Sobic.003G051900 - -
15 Sobic.003G063600 expressed protein -
16 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -
17 Sobic.003G237700 - -
18 Sobic.010G021600 - -
19 Sobic.004G048600 coiled-coil domain-containing protein 72, putative, expressed -
20 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase


Gene co-expression network
sample Sobic001G508000 Sobic001G508000 Sobic003G177500 Sobic003G177500 Sobic001G508000--Sobic003G177500 Sobic003G399166 Sobic003G399166 Sobic001G508000--Sobic003G399166 Sobic001G192750 Sobic001G192750 Sobic001G508000--Sobic001G192750 Sobic005G163450 Sobic005G163450 Sobic001G508000--Sobic005G163450 Sobic005G156800 Sobic005G156800 Sobic001G508000--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic001G508000--Sobic002G380750 Sobic003G291050 Sobic003G291050 Sobic001G508000--Sobic003G291050 Sobic010G158601 Sobic010G158601 Sobic001G508000--Sobic010G158601 Sobic009G066850 Sobic009G066850 Sobic001G508000--Sobic009G066850 Sobic003G177500--Sobic001G508000 Sobic003G177500--Sobic003G399166 Sobic002G185400 Sobic002G185400 Sobic003G177500--Sobic002G185400 Sobic003G177500--Sobic005G163450 Sobic003G177500--Sobic010G158601 Sobic003G303000 Sobic003G303000 Sobic003G177500--Sobic003G303000 Sobic003G051900 Sobic003G051900 Sobic003G177500--Sobic003G051900 Sobic003G177500--Sobic001G192750 Sobic010G043500 Sobic010G043500 Sobic003G177500--Sobic010G043500 Sobic003G399166--Sobic005G163450 Sobic001G307450 Sobic001G307450 Sobic003G399166--Sobic001G307450 Sobic003G399166--Sobic005G156800 Sobic003G399166--Sobic002G380750 Sobic007G120100 Sobic007G120100 Sobic003G399166--Sobic007G120100 Sobic003G063600 Sobic003G063600 Sobic003G399166--Sobic003G063600 Sobic001G452400 Sobic001G452400 Sobic003G399166--Sobic001G452400 Sobic003G399166--Sobic003G291050 Sobic003G399166--Sobic003G303000 Sobic001G192750--Sobic009G066850 Sobic004G067850 Sobic004G067850 Sobic001G192750--Sobic004G067850 Sobic008G032850 Sobic008G032850 Sobic001G192750--Sobic008G032850 Sobic001G084200 Sobic001G084200 Sobic001G192750--Sobic001G084200 Sobic009G168700 Sobic009G168700 Sobic001G192750--Sobic009G168700 Sobic006G138966 Sobic006G138966 Sobic001G192750--Sobic006G138966 Sobic002G302400 Sobic002G302400 Sobic001G192750--Sobic002G302400 Sobic008G192100 Sobic008G192100 Sobic001G192750--Sobic008G192100 Sobic001G272300 Sobic001G272300 Sobic001G192750--Sobic001G272300 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic005G163450--Sobic001G307450 Sobic005G163450--Sobic007G120100 Sobic005G163450--Sobic001G452400 Sobic005G163450--Sobic003G303000 Sobic005G163450--Sobic003G063600 Sobic005G163450--Sobic003G291050 Sobic005G156800--Sobic002G380750 Sobic005G156800--Sobic001G452400 Sobic010G021600 Sobic010G021600 Sobic005G156800--Sobic010G021600 Sobic001G493300 Sobic001G493300 Sobic005G156800--Sobic001G493300 Sobic005G156800--Sobic001G272300 Sobic002G380750--Sobic005G156800 Sobic002G380750--Sobic001G452400 Sobic002G380750--Sobic010G021600 Sobic002G380750--Sobic001G493300 Sobic002G380750--Sobic001G272300 Sobic002G057550 Sobic002G057550 Sobic003G291050--Sobic002G057550 Sobic004G048600 Sobic004G048600 Sobic003G291050--Sobic004G048600 Sobic003G291050--Sobic001G452400 Sobic003G291050--Sobic002G380750 Sobic003G291050--Sobic005G156800 Sobic003G291050--Sobic002G302400 Sobic003G291050--Sobic008G192100 Sobic003G291050--Sobic001G272300 Sobic009G147100 Sobic009G147100 Sobic010G158601--Sobic009G147100 Sobic010G158601--Sobic009G066850 Sobic010G158601--Sobic002G380750 Sobic010G158601--Sobic005G156800 Sobic010G158601--Sobic001G452400 Sobic008G085600 Sobic008G085600 Sobic010G158601--Sobic008G085600 Sobic010G158601--Sobic008G192100 Sobic002G157350 Sobic002G157350 Sobic010G158601--Sobic002G157350 Sobic007G024900 Sobic007G024900 Sobic010G158601--Sobic007G024900 Sobic009G066850--Sobic002G057550 Sobic009G066850--Sobic002G302400 Sobic009G066850--Sobic008G192100 Sobic007G100275 Sobic007G100275 Sobic009G066850--Sobic007G100275 Sobic009G066850--Sobic009G147100 Sobic009G066850--Sobic009G168700 Sobic009G150100 Sobic009G150100 Sobic009G066850--Sobic009G150100 SobicK042700 SobicK042700 Sobic009G066850--SobicK042700 Sobic003G091100 Sobic003G091100 Sobic009G066850--Sobic003G091100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.