Gene annotation
Transcriptome id Sobic.003G177500.1,Sobic.003G177500.2
Synonym Sb03g022900
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
UniProt C5XM71 , C5XM69
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF121
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g35230.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK18706 , KQK18695 , KQJ99197
Barley HORVU7Hr1G045660.3 , HORVU7Hr1G041460.1
Wheat TraesCS7A02G203200 , TraesCS7B02G110400 , TraesCS7D02G224500 , TraesCS6B02G306800 , TraesCS6D02G259100 , TraesCS6D02G259100 , TraesCS6A02G278500 , TraesCS7D02G206500
Populus -


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cDNA sequences
Sobic.003G177500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G508000 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
2 Sobic.003G399166 - -
3 Sobic.002G185400 transporter-related, putative, expressed -
4 Sobic.005G163450 - -
5 Sobic.010G158601 - -
6 Sobic.003G303000 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
7 Sobic.003G051900 - -
8 Sobic.001G192750 - -
9 Sobic.010G043500 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.003G063600 expressed protein -
11 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
12 Sobic.002G380750 - -
13 Sobic.001G084200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
14 Sobic.009G168700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
15 Sobic.006G116200 receptor protein kinase CLAVATA1 precursor, putative, expressed -
16 Sobic.010G212900 expressed protein -
17 Sobic.003G237700 - -
18 Sobic.010G021600 - -
19 Sobic.006G229400 PB1 domain containing protein, expressed -
20 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G177500 Sobic003G177500 Sobic001G508000 Sobic001G508000 Sobic003G177500--Sobic001G508000 Sobic003G399166 Sobic003G399166 Sobic003G177500--Sobic003G399166 Sobic002G185400 Sobic002G185400 Sobic003G177500--Sobic002G185400 Sobic005G163450 Sobic005G163450 Sobic003G177500--Sobic005G163450 Sobic010G158601 Sobic010G158601 Sobic003G177500--Sobic010G158601 Sobic003G303000 Sobic003G303000 Sobic003G177500--Sobic003G303000 Sobic003G051900 Sobic003G051900 Sobic003G177500--Sobic003G051900 Sobic001G192750 Sobic001G192750 Sobic003G177500--Sobic001G192750 Sobic010G043500 Sobic010G043500 Sobic003G177500--Sobic010G043500 Sobic001G508000--Sobic003G177500 Sobic001G508000--Sobic003G399166 Sobic001G508000--Sobic001G192750 Sobic001G508000--Sobic005G163450 Sobic005G156800 Sobic005G156800 Sobic001G508000--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic001G508000--Sobic002G380750 Sobic003G291050 Sobic003G291050 Sobic001G508000--Sobic003G291050 Sobic001G508000--Sobic010G158601 Sobic009G066850 Sobic009G066850 Sobic001G508000--Sobic009G066850 Sobic003G399166--Sobic005G163450 Sobic001G307450 Sobic001G307450 Sobic003G399166--Sobic001G307450 Sobic003G399166--Sobic005G156800 Sobic003G399166--Sobic002G380750 Sobic007G120100 Sobic007G120100 Sobic003G399166--Sobic007G120100 Sobic003G063600 Sobic003G063600 Sobic003G399166--Sobic003G063600 Sobic001G452400 Sobic001G452400 Sobic003G399166--Sobic001G452400 Sobic003G399166--Sobic003G291050 Sobic003G399166--Sobic003G303000 Sobic001G084200 Sobic001G084200 Sobic002G185400--Sobic001G084200 Sobic001G001132 Sobic001G001132 Sobic002G185400--Sobic001G001132 Sobic009G168700 Sobic009G168700 Sobic002G185400--Sobic009G168700 Sobic006G138966 Sobic006G138966 Sobic002G185400--Sobic006G138966 Sobic005G073101 Sobic005G073101 Sobic002G185400--Sobic005G073101 Sobic002G185400--Sobic001G192750 Sobic004G067850 Sobic004G067850 Sobic002G185400--Sobic004G067850 Sobic008G032850 Sobic008G032850 Sobic002G185400--Sobic008G032850 Sobic002G342200 Sobic002G342200 Sobic002G185400--Sobic002G342200 Sobic005G163450--Sobic003G399166 Sobic005G163450--Sobic005G156800 Sobic005G163450--Sobic002G380750 Sobic005G163450--Sobic001G307450 Sobic005G163450--Sobic007G120100 Sobic005G163450--Sobic001G452400 Sobic005G163450--Sobic003G303000 Sobic005G163450--Sobic003G063600 Sobic005G163450--Sobic003G291050 Sobic009G147100 Sobic009G147100 Sobic010G158601--Sobic009G147100 Sobic010G158601--Sobic009G066850 Sobic010G158601--Sobic002G380750 Sobic010G158601--Sobic005G156800 Sobic010G158601--Sobic001G452400 Sobic008G085600 Sobic008G085600 Sobic010G158601--Sobic008G085600 Sobic008G192100 Sobic008G192100 Sobic010G158601--Sobic008G192100 Sobic002G157350 Sobic002G157350 Sobic010G158601--Sobic002G157350 Sobic007G024900 Sobic007G024900 Sobic010G158601--Sobic007G024900 Sobic003G429101 Sobic003G429101 Sobic003G303000--Sobic003G429101 Sobic003G303000--Sobic005G163450 Sobic006G261000 Sobic006G261000 Sobic003G303000--Sobic006G261000 Sobic001G388100 Sobic001G388100 Sobic003G303000--Sobic001G388100 Sobic003G241400 Sobic003G241400 Sobic003G303000--Sobic003G241400 Sobic003G303000--Sobic005G156800 Sobic003G303000--Sobic002G380750 Sobic004G041000 Sobic004G041000 Sobic003G303000--Sobic004G041000 Sobic009G214700 Sobic009G214700 Sobic003G303000--Sobic009G214700 Sobic003G141550 Sobic003G141550 Sobic003G051900--Sobic003G141550 Sobic003G046900 Sobic003G046900 Sobic003G051900--Sobic003G046900 Sobic003G051900--Sobic001G452400 Sobic005G082950 Sobic005G082950 Sobic003G051900--Sobic005G082950 Sobic003G051900--Sobic002G380750 Sobic003G058400 Sobic003G058400 Sobic003G051900--Sobic003G058400 Sobic003G051900--Sobic005G156800 Sobic008G192200 Sobic008G192200 Sobic003G051900--Sobic008G192200 Sobic004G196000 Sobic004G196000 Sobic003G051900--Sobic004G196000 Sobic001G192750--Sobic009G066850 Sobic001G192750--Sobic004G067850 Sobic001G192750--Sobic008G032850 Sobic001G192750--Sobic001G084200 Sobic001G192750--Sobic009G168700 Sobic001G192750--Sobic006G138966 Sobic002G302400 Sobic002G302400 Sobic001G192750--Sobic002G302400 Sobic001G192750--Sobic008G192100 Sobic001G272300 Sobic001G272300 Sobic001G192750--Sobic001G272300 Sobic004G048600 Sobic004G048600 Sobic010G043500--Sobic004G048600 Sobic003G143401 Sobic003G143401 Sobic010G043500--Sobic003G143401 Sobic002G081000 Sobic002G081000 Sobic010G043500--Sobic002G081000 Sobic007G154901 Sobic007G154901 Sobic010G043500--Sobic007G154901 Sobic010G043500--Sobic008G192100 Sobic010G043500--Sobic002G302400 Sobic007G005800 Sobic007G005800 Sobic010G043500--Sobic007G005800 Sobic010G229200 Sobic010G229200 Sobic010G043500--Sobic010G229200 Sobic001G497750 Sobic001G497750 Sobic010G043500--Sobic001G497750
Octagon: transcription factors


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