Gene annotation
Transcriptome id Sobic.002G139900.1
Synonym CSLA09, RAT4, ATCSLA9, CSLA9, Sb02g012870, ATCSLA09
Functional annotation CSLA1 - cellulose synthase-like family A
mannan synthase, expressed
UniProt A0A1W0W3W5
Pfam PF13632
Panther DB PTHR32044 PTHR32044:SF25
NCBI CDD -
KEGG Orthology K13680; beta-mannan synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G03760 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os06g42020.1 : CSLA9 - cellulose synthase-like family A, expressed
MaizeGDB (Corn) Zm00025a034690 , Zm00025a013469 , Zm00025a051489 , Zm00025a027859 , Zm00025a027857 , Zm00025a013468
Brachypodium KQJ91613
Barley HORVU6Hr1G034630.9 , HORVU6Hr1G034630.4 , HORVU6Hr1G034630.5 , HORVU6Hr1G034630.6 , HORVU6Hr1G034630.7 , HORVU6Hr1G034630.3 , HORVU4Hr1G000610.3 , HORVU4Hr1G000610.2 , HORVU4Hr1G000610.1 , HORVU6Hr1G018840.5 , HORVU6Hr1G018840.6 , HORVU6Hr1G018840.9 , HORVU6Hr1G018840.8 , HORVU6Hr1G018840.7 , HORVU6Hr1G018840.1 , HORVU6Hr1G018840.3 , HORVU6Hr1G018840.2 , HORVU6Hr1G034630.12 , HORVU6Hr1G034630.13 , HORVU6Hr1G034630.10 , HORVU6Hr1G034630.11 , HORVU7Hr1G092910.4 , HORVU7Hr1G092910.5 , HORVU7Hr1G092910.2 , HORVU7Hr1G092910.3 , HORVU6Hr1G018840.13 , HORVU6Hr1G018840.12 , HORVU6Hr1G018840.15 , HORVU6Hr1G018840.14 , HORVU6Hr1G018840.17 , HORVU6Hr1G018840.16
Wheat TraesCS2B02G560100 , TraesCS7A02G394000 , TraesCS6D02G094300 , TraesCS2D02G532800 , TraesCS6D02G158600 , TraesCS7D02G544700 , TraesCS7D02G389500 , TraesCS6A02G169200 , TraesCS7D02G389500 , TraesCS7B02G296100 , TraesCS7B02G296000 , TraesCS2A02G530900 , TraesCS7B02G494000 , TraesCS6A02G105800 , TraesCS6B02G197200
Populus -


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cDNA sequences
Sobic.002G139900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G355700 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.010G010600 - -
3 Sobic.001G297300 - -
4 Sobic.007G209700 - -
5 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
6 Sobic.001G059800 cupin domain containing protein, expressed -
7 Sobic.010G216800 expressed protein -
8 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
10 Sobic.010G209300 expressed protein -
11 Sobic.002G088000 cytokinin-N-glucosyltransferase 1, putative, expressed -
12 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
13 Sobic.002G234100 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
14 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
16 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
17 Sobic.010G181900 expressed protein -
18 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
19 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
20 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic002G139900 Sobic002G139900 Sobic003G355700 Sobic003G355700 Sobic002G139900--Sobic003G355700 Sobic010G010600 Sobic010G010600 Sobic002G139900--Sobic010G010600 Sobic001G297300 Sobic001G297300 Sobic002G139900--Sobic001G297300 Sobic007G209700 Sobic007G209700 Sobic002G139900--Sobic007G209700 Sobic007G123000 Sobic007G123000 Sobic002G139900--Sobic007G123000 Sobic001G059800 Sobic001G059800 Sobic002G139900--Sobic001G059800 Sobic010G216800 Sobic010G216800 Sobic002G139900--Sobic010G216800 Sobic003G307600 Sobic003G307600 Sobic002G139900--Sobic003G307600 Sobic002G408700 Sobic002G408700 Sobic002G139900--Sobic002G408700 Sobic005G089101 Sobic005G089101 Sobic003G355700--Sobic005G089101 Sobic010G181900 Sobic010G181900 Sobic003G355700--Sobic010G181900 Sobic003G355700--Sobic003G307600 Sobic002G100000 Sobic002G100000 Sobic003G355700--Sobic002G100000 Sobic004G220900 Sobic004G220900 Sobic003G355700--Sobic004G220900 Sobic002G217000 Sobic002G217000 Sobic003G355700--Sobic002G217000 Sobic005G197000 Sobic005G197000 Sobic003G355700--Sobic005G197000 Sobic007G037200 Sobic007G037200 Sobic003G355700--Sobic007G037200 Sobic006G004100 Sobic006G004100 Sobic003G355700--Sobic006G004100 Sobic010G010600--Sobic010G216800 Sobic010G010600--Sobic007G123000 Sobic010G010600--Sobic001G297300 Sobic010G209300 Sobic010G209300 Sobic010G010600--Sobic010G209300 Sobic002G088000 Sobic002G088000 Sobic010G010600--Sobic002G088000 Sobic006G271400 Sobic006G271400 Sobic010G010600--Sobic006G271400 Sobic006G279000 Sobic006G279000 Sobic010G010600--Sobic006G279000 Sobic008G001700 Sobic008G001700 Sobic010G010600--Sobic008G001700 Sobic010G010600--Sobic001G059800 Sobic001G297300--Sobic001G059800 Sobic002G059100 Sobic002G059100 Sobic001G297300--Sobic002G059100 Sobic001G297300--Sobic010G010600 Sobic001G297300--Sobic007G209700 Sobic001G297300--Sobic007G123000 Sobic002G211501 Sobic002G211501 Sobic001G297300--Sobic002G211501 Sobic001G297300--Sobic010G216800 Sobic001G297300--Sobic006G279000 Sobic001G234000 Sobic001G234000 Sobic001G297300--Sobic001G234000 Sobic007G209700--Sobic003G307600 Sobic002G234100 Sobic002G234100 Sobic007G209700--Sobic002G234100 Sobic009G051201 Sobic009G051201 Sobic007G209700--Sobic009G051201 Sobic007G209700--Sobic007G123000 Sobic007G209700--Sobic010G181900 Sobic002G101200 Sobic002G101200 Sobic007G209700--Sobic002G101200 Sobic007G209700--Sobic002G217000 Sobic007G209700--Sobic001G297300 Sobic007G209700--Sobic005G089101 Sobic007G147300 Sobic007G147300 Sobic007G123000--Sobic007G147300 Sobic007G122932 Sobic007G122932 Sobic007G123000--Sobic007G122932 Sobic009G021300 Sobic009G021300 Sobic007G123000--Sobic009G021300 Sobic007G123000--Sobic008G001700 Sobic005G001500 Sobic005G001500 Sobic007G123000--Sobic005G001500 Sobic007G123000--Sobic002G408700 Sobic007G123000--Sobic010G209300 Sobic008G071900 Sobic008G071900 Sobic007G123000--Sobic008G071900 Sobic009G086800 Sobic009G086800 Sobic007G123000--Sobic009G086800 Sobic001G059800--Sobic001G297300 Sobic001G059800--Sobic002G059100 Sobic001G059800--Sobic002G211501 Sobic001G059800--Sobic010G216800 Sobic001G059800--Sobic010G010600 Sobic010G274300 Sobic010G274300 Sobic001G059800--Sobic010G274300 Sobic001G059800--Sobic001G234000 Sobic001G059800--Sobic007G123000 Sobic001G059800--Sobic007G209700 Sobic010G216800--Sobic002G211501 Sobic010G216800--Sobic010G274300 Sobic002G291132 Sobic002G291132 Sobic010G216800--Sobic002G291132 Sobic010G216800--Sobic010G010600 Sobic009G061800 Sobic009G061800 Sobic010G216800--Sobic009G061800 Sobic010G216800--Sobic009G086800 Sobic010G216800--Sobic002G088000 Sobic003G350900 Sobic003G350900 Sobic010G216800--Sobic003G350900 Sobic001G259300 Sobic001G259300 Sobic010G216800--Sobic001G259300 Sobic003G307600--Sobic010G181900 Sobic003G307600--Sobic005G001500 Sobic003G307600--Sobic005G089101 Sobic003G307600--Sobic002G100000 Sobic003G227800 Sobic003G227800 Sobic003G307600--Sobic003G227800 Sobic003G063900 Sobic003G063900 Sobic003G307600--Sobic003G063900 Sobic003G307600--Sobic002G408700 Sobic008G168400 Sobic008G168400 Sobic003G307600--Sobic008G168400 Sobic003G307600--Sobic009G021300 Sobic002G408700--Sobic005G001500 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic001G142600 Sobic001G142600 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic002G408700--Sobic010G181900 Sobic010G102900 Sobic010G102900 Sobic002G408700--Sobic010G102900 Sobic003G291100 Sobic003G291100 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800
Octagon: transcription factors


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