Gene annotation
Transcriptome id Sobic.001G059800.1
Synonym Sb01g005440, PAP85
Functional annotation cupin domain containing protein, expressed
UniProt A0A1Z5S4J3
Pfam PF00190
Panther DB PTHR31189 PTHR31189:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22640 : cupin family protein
RAP-DB (Rice) LOC_Os03g57960.1 : cupin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008534
Brachypodium -
Barley HORVU5Hr1G104630.1
Wheat TraesCS5D02G440000 , TraesCS5B02G434100
Populus -


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cDNA sequences
Sobic.001G059800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G297300 - -
2 Sobic.002G059100 OsFBX239 - F-box domain containing protein, expressed -
3 Sobic.002G211501 - -
4 Sobic.010G216800 expressed protein -
5 Sobic.010G010600 - -
6 Sobic.010G274300 ZOS6-11 - C2H2 zinc finger protein, expressed -
7 Sobic.001G234000 expressed protein -
8 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
9 Sobic.007G209700 - -
10 Sobic.003G302466 - -
11 Sobic.002G291132 - -
12 Sobic.002G088000 cytokinin-N-glucosyltransferase 1, putative, expressed -
13 Sobic.006G279000 expressed protein -
14 Sobic.009G086800 no apical meristem protein, putative, expressed -
15 Sobic.005G003001 - -
16 Sobic.002G139900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
17 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
18 Sobic.004G105300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
20 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G059800 Sobic001G059800 Sobic001G297300 Sobic001G297300 Sobic001G059800--Sobic001G297300 Sobic002G059100 Sobic002G059100 Sobic001G059800--Sobic002G059100 Sobic002G211501 Sobic002G211501 Sobic001G059800--Sobic002G211501 Sobic010G216800 Sobic010G216800 Sobic001G059800--Sobic010G216800 Sobic010G010600 Sobic010G010600 Sobic001G059800--Sobic010G010600 Sobic010G274300 Sobic010G274300 Sobic001G059800--Sobic010G274300 Sobic001G234000 Sobic001G234000 Sobic001G059800--Sobic001G234000 Sobic007G123000 Sobic007G123000 Sobic001G059800--Sobic007G123000 Sobic007G209700 Sobic007G209700 Sobic001G059800--Sobic007G209700 Sobic001G297300--Sobic001G059800 Sobic001G297300--Sobic002G059100 Sobic001G297300--Sobic010G010600 Sobic001G297300--Sobic007G209700 Sobic001G297300--Sobic007G123000 Sobic001G297300--Sobic002G211501 Sobic001G297300--Sobic010G216800 Sobic006G279000 Sobic006G279000 Sobic001G297300--Sobic006G279000 Sobic001G297300--Sobic001G234000 Sobic002G059100--Sobic001G059800 Sobic002G059100--Sobic001G297300 Sobic002G059100--Sobic010G274300 Sobic002G059100--Sobic002G211501 Sobic002G059100--Sobic010G010600 Sobic002G059100--Sobic001G234000 Sobic003G302466 Sobic003G302466 Sobic002G059100--Sobic003G302466 Sobic002G059100--Sobic010G216800 Sobic010G207450 Sobic010G207450 Sobic002G059100--Sobic010G207450 Sobic002G291132 Sobic002G291132 Sobic002G211501--Sobic002G291132 Sobic002G211501--Sobic010G216800 Sobic002G211501--Sobic010G274300 Sobic009G086800 Sobic009G086800 Sobic002G211501--Sobic009G086800 Sobic002G211501--Sobic001G234000 Sobic009G061800 Sobic009G061800 Sobic002G211501--Sobic009G061800 Sobic001G259300 Sobic001G259300 Sobic002G211501--Sobic001G259300 Sobic001G530400 Sobic001G530400 Sobic002G211501--Sobic001G530400 Sobic006G036201 Sobic006G036201 Sobic002G211501--Sobic006G036201 Sobic010G216800--Sobic002G211501 Sobic010G216800--Sobic010G274300 Sobic010G216800--Sobic002G291132 Sobic010G216800--Sobic010G010600 Sobic010G216800--Sobic009G061800 Sobic010G216800--Sobic009G086800 Sobic002G088000 Sobic002G088000 Sobic010G216800--Sobic002G088000 Sobic003G350900 Sobic003G350900 Sobic010G216800--Sobic003G350900 Sobic010G216800--Sobic001G259300 Sobic010G010600--Sobic010G216800 Sobic010G010600--Sobic007G123000 Sobic010G010600--Sobic001G297300 Sobic010G209300 Sobic010G209300 Sobic010G010600--Sobic010G209300 Sobic010G010600--Sobic002G088000 Sobic006G271400 Sobic006G271400 Sobic010G010600--Sobic006G271400 Sobic010G010600--Sobic006G279000 Sobic008G001700 Sobic008G001700 Sobic010G010600--Sobic008G001700 Sobic010G010600--Sobic001G059800 Sobic010G274300--Sobic010G216800 Sobic010G274300--Sobic002G211501 Sobic004G105300 Sobic004G105300 Sobic010G274300--Sobic004G105300 Sobic001G166500 Sobic001G166500 Sobic010G274300--Sobic001G166500 Sobic010G274300--Sobic002G291132 Sobic007G172800 Sobic007G172800 Sobic010G274300--Sobic007G172800 Sobic010G274300--Sobic003G302466 Sobic001G203100 Sobic001G203100 Sobic010G274300--Sobic001G203100 Sobic010G274300--Sobic001G059800 Sobic001G234000--Sobic002G211501 Sobic004G090300 Sobic004G090300 Sobic001G234000--Sobic004G090300 Sobic007G064400 Sobic007G064400 Sobic001G234000--Sobic007G064400 Sobic001G234000--Sobic006G279000 Sobic004G187200 Sobic004G187200 Sobic001G234000--Sobic004G187200 Sobic001G234000--Sobic002G291132 Sobic001G234000--Sobic001G530400 Sobic002G147500 Sobic002G147500 Sobic001G234000--Sobic002G147500 Sobic001G234000--Sobic010G274300 Sobic007G147300 Sobic007G147300 Sobic007G123000--Sobic007G147300 Sobic007G122932 Sobic007G122932 Sobic007G123000--Sobic007G122932 Sobic009G021300 Sobic009G021300 Sobic007G123000--Sobic009G021300 Sobic007G123000--Sobic008G001700 Sobic005G001500 Sobic005G001500 Sobic007G123000--Sobic005G001500 Sobic002G408700 Sobic002G408700 Sobic007G123000--Sobic002G408700 Sobic007G123000--Sobic010G209300 Sobic008G071900 Sobic008G071900 Sobic007G123000--Sobic008G071900 Sobic007G123000--Sobic009G086800 Sobic003G307600 Sobic003G307600 Sobic007G209700--Sobic003G307600 Sobic002G234100 Sobic002G234100 Sobic007G209700--Sobic002G234100 Sobic009G051201 Sobic009G051201 Sobic007G209700--Sobic009G051201 Sobic007G209700--Sobic007G123000 Sobic010G181900 Sobic010G181900 Sobic007G209700--Sobic010G181900 Sobic002G101200 Sobic002G101200 Sobic007G209700--Sobic002G101200 Sobic002G217000 Sobic002G217000 Sobic007G209700--Sobic002G217000 Sobic007G209700--Sobic001G297300 Sobic005G089101 Sobic005G089101 Sobic007G209700--Sobic005G089101
Octagon: transcription factors


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