Gene annotation
Transcriptome id Sobic.002G282900.1
Synonym Sb02g031570
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pyridoxal-dependent decarboxylase protein, putative, expressed
UniProt C5X6Y9
Pfam PF00278 PF02784
Panther DB PTHR11482 PTHR11482:SF6
NCBI CDD KOG0622; Ornithine decarboxylase
KEGG Orthology K01581; E4.1.1.17, ODC1, speC, ornithine decarboxylase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT5G11880 : Pyridoxal-dependent decarboxylase family protein
RAP-DB (Rice) LOC_Os09g37120.1 : pyridoxal-dependent decarboxylase protein, putative, expressed
MaizeGDB (Corn) Zm00025a049288 , Zm00025a015760 , Zm00025a047826
Brachypodium KQJ91290 , PNT65044
Barley HORVU7Hr1G032100.1 , HORVU7Hr1G032100.2 , HORVU5Hr1G084750.3 , HORVU5Hr1G084750.1
Wheat TraesCS5B02G304100
Populus -


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cDNA sequences
Sobic.002G282900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G173800 DEFL12 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.010G200400 AP2 domain containing protein, expressed -
3 Sobic.007G205100 AP2 domain containing protein, expressed -
4 Sobic.002G338600 expressed protein -
5 Sobic.010G200200 AP2 domain containing protein, expressed -
6 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
7 Sobic.008G081700 - -
8 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.001G259250 - -
10 Sobic.005G153200 - -
11 Sobic.004G142000 - -
12 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.001G175501 - -
14 Sobic.006G051750 - -
15 Sobic.008G081000 - -
16 Sobic.004G261000 expressed protein -
17 Sobic.001G068200 - -
18 Sobic.008G176600 expressed protein -
19 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
20 Sobic.009G116500 esterase, putative, expressed -


Gene co-expression network
sample Sobic002G282900 Sobic002G282900 Sobic005G173800 Sobic005G173800 Sobic002G282900--Sobic005G173800 Sobic010G200400 Sobic010G200400 Sobic002G282900--Sobic010G200400 Sobic007G205100 Sobic007G205100 Sobic002G282900--Sobic007G205100 Sobic002G338600 Sobic002G338600 Sobic002G282900--Sobic002G338600 Sobic010G200200 Sobic010G200200 Sobic002G282900--Sobic010G200200 Sobic002G089400 Sobic002G089400 Sobic002G282900--Sobic002G089400 Sobic008G081700 Sobic008G081700 Sobic002G282900--Sobic008G081700 Sobic007G025300 Sobic007G025300 Sobic002G282900--Sobic007G025300 Sobic001G259250 Sobic001G259250 Sobic002G282900--Sobic001G259250 Sobic010G085700 Sobic010G085700 Sobic005G173800--Sobic010G085700 Sobic009G040000 Sobic009G040000 Sobic005G173800--Sobic009G040000 Sobic001G253400 Sobic001G253400 Sobic005G173800--Sobic001G253400 Sobic003G207600 Sobic003G207600 Sobic005G173800--Sobic003G207600 Sobic006G051750 Sobic006G051750 Sobic005G173800--Sobic006G051750 Sobic001G158600 Sobic001G158600 Sobic005G173800--Sobic001G158600 Sobic006G104800 Sobic006G104800 Sobic005G173800--Sobic006G104800 Sobic001G068200 Sobic001G068200 Sobic005G173800--Sobic001G068200 Sobic004G261000 Sobic004G261000 Sobic005G173800--Sobic004G261000 Sobic010G200400--Sobic007G205100 Sobic010G200400--Sobic002G089400 Sobic010G200400--Sobic002G338600 Sobic002G028100 Sobic002G028100 Sobic010G200400--Sobic002G028100 Sobic010G200400--Sobic007G025300 Sobic010G200400--Sobic008G081700 Sobic010G200400--Sobic010G200200 Sobic002G367600 Sobic002G367600 Sobic010G200400--Sobic002G367600 Sobic009G116500 Sobic009G116500 Sobic010G200400--Sobic009G116500 Sobic007G205100--Sobic010G200400 Sobic007G205100--Sobic002G338600 Sobic007G205100--Sobic002G089400 Sobic007G205100--Sobic002G028100 Sobic007G205100--Sobic010G200200 Sobic007G205100--Sobic008G081700 Sobic007G205100--Sobic002G367600 Sobic007G205100--Sobic007G025300 Sobic007G205100--Sobic001G259250 Sobic002G338600--Sobic007G205100 Sobic002G338600--Sobic010G200200 Sobic002G338600--Sobic008G081700 Sobic002G338600--Sobic010G200400 Sobic002G338600--Sobic002G028100 Sobic002G338600--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic002G338600--Sobic005G153200 Sobic004G142000 Sobic004G142000 Sobic002G338600--Sobic004G142000 Sobic002G338600--Sobic002G089400 Sobic010G200200--Sobic001G259250 Sobic010G200200--Sobic005G153200 Sobic010G200200--Sobic004G142000 Sobic010G200200--Sobic002G338600 Sobic010G200200--Sobic007G205100 Sobic010G200200--Sobic008G081700 Sobic010G200200--Sobic002G028100 Sobic010G200200--Sobic006G051750 Sobic010G200200--Sobic010G200400 Sobic002G089400--Sobic010G200400 Sobic002G089400--Sobic007G205100 Sobic002G089400--Sobic002G028100 Sobic002G089400--Sobic002G338600 Sobic002G089400--Sobic007G025300 Sobic001G297800 Sobic001G297800 Sobic002G089400--Sobic001G297800 Sobic002G089400--Sobic002G367600 Sobic002G089400--Sobic009G116500 Sobic001G535900 Sobic001G535900 Sobic002G089400--Sobic001G535900 Sobic008G081700--Sobic002G338600 Sobic008G081700--Sobic010G200200 Sobic008G081700--Sobic007G205100 Sobic008G081700--Sobic010G200400 Sobic008G081700--Sobic001G259250 Sobic008G081700--Sobic005G153200 Sobic008G081700--Sobic004G142000 Sobic008G081700--Sobic002G028100 Sobic008G081700--Sobic009G116500 Sobic008G103066 Sobic008G103066 Sobic007G025300--Sobic008G103066 Sobic007G025300--Sobic002G089400 Sobic007G025300--Sobic010G200400 Sobic006G062700 Sobic006G062700 Sobic007G025300--Sobic006G062700 Sobic005G174900 Sobic005G174900 Sobic007G025300--Sobic005G174900 Sobic009G001600 Sobic009G001600 Sobic007G025300--Sobic009G001600 Sobic007G025300--Sobic002G367600 Sobic007G025300--Sobic001G535900 Sobic007G025300--Sobic007G205100 Sobic001G259250--Sobic005G153200 Sobic001G259250--Sobic004G142000 Sobic001G259250--Sobic010G200200 Sobic001G259250--Sobic006G051750 Sobic001G259250--Sobic002G338600 Sobic001G259250--Sobic004G261000 Sobic001G259250--Sobic008G081700 Sobic001G259250--Sobic007G205100 Sobic007G034900 Sobic007G034900 Sobic001G259250--Sobic007G034900
Octagon: transcription factors


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