Gene annotation
Transcriptome id Sobic.003G226900.1
Synonym Sb03g028480
Functional annotation aspartic proteinase nepenthesin-2 precursor, putative, expressed
UniProt C5XEC8
Pfam PF14541
Panther DB PTHR13683 PTHR13683:SF367
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G10770 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os06g20190.1 : aspartic proteinase nepenthesin-2 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a021836
Brachypodium KQJ90710
Barley HORVU7Hr1G045670.1 , HORVU7Hr1G045670.2
Wheat TraesCS5A02G259400 , TraesCS5A02G259400 , TraesCS7B02G090800 , TraesCS7D02G187300 , TraesCS2A02G589700 , TraesCS7D02G187500 , TraesCS5B02G258200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
2 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
3 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
4 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
5 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
6 Sobic.003G267150 - -
7 Sobic.004G262550 - -
8 Sobic.009G091940 - -
9 Sobic.003G389150 - -
10 Sobic.004G313000 leucine rich repeat containing protein, expressed -
11 Sobic.005G162200 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
12 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
13 Sobic.008G108100 - -
14 Sobic.005G216833 - -
15 Sobic.007G014500 NB-ARC domain containing protein, expressed -
16 Sobic.004G149150 - -
17 Sobic.009G115800 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
18 Sobic.009G236150 - -
19 Sobic.006G159500 serpin domain containing protein, putative, expressed K13963: serpin B
20 Sobic.004G248000 expressed protein -


Gene co-expression network
sample Sobic003G226900 Sobic003G226900 Sobic002G160500 Sobic002G160500 Sobic003G226900--Sobic002G160500 Sobic003G267150 Sobic003G267150 Sobic003G226900--Sobic003G267150 Sobic004G262550 Sobic004G262550 Sobic003G226900--Sobic004G262550 Sobic009G091940 Sobic009G091940 Sobic003G226900--Sobic009G091940 Sobic003G389150 Sobic003G389150 Sobic003G226900--Sobic003G389150 Sobic002G160500--Sobic002G160500 Sobic002G160500--Sobic003G267150 Sobic002G160500--Sobic004G262550 Sobic002G160500--Sobic009G091940 Sobic002G160500--Sobic003G389150 Sobic004G313000 Sobic004G313000 Sobic002G160500--Sobic004G313000 Sobic003G267150--Sobic002G160500 Sobic003G267150--Sobic004G262550 Sobic003G267150--Sobic009G091940 Sobic003G267150--Sobic004G313000 Sobic003G267150--Sobic003G389150 Sobic004G262550--Sobic002G160500 Sobic004G262550--Sobic003G267150 Sobic004G262550--Sobic009G091940 Sobic004G262550--Sobic003G389150 Sobic004G262550--Sobic004G313000 Sobic009G091940--Sobic002G160500 Sobic009G091940--Sobic003G267150 Sobic009G091940--Sobic004G262550 Sobic009G091940--Sobic003G389150 Sobic009G091940--Sobic004G313000 Sobic003G389150--Sobic002G160500 Sobic003G389150--Sobic003G267150 Sobic003G389150--Sobic004G262550 Sobic003G389150--Sobic009G091940 Sobic003G389150--Sobic004G313000
Octagon: transcription factors


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