Gene annotation
Transcriptome id Sobic.003G279400.1
Synonym LHB1B1, LHCB1.4
Functional annotation chlorophyll A-B binding protein, putative, expressed
UniProt A0A1B6Q5S8
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT2G34430 : light-harvesting chlorophyll-protein complex II subunit B1
RAP-DB (Rice) LOC_Os01g41710.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047961 , Zm00025a029543 , Zm00025a028623 , Zm00025a028624 , Zm00025a015577
Brachypodium KQJ88785 , KQK15763 , KQJ91372 , KQK04838
Barley HORVU7Hr1G040380.8 , HORVU7Hr1G040380.9 , HORVU7Hr1G040380.6 , HORVU7Hr1G040380.7 , HORVU7Hr1G040380.4 , HORVU7Hr1G040380.5 , HORVU7Hr1G040380.2 , HORVU7Hr1G040380.3 , HORVU7Hr1G040380.1 , HORVU6Hr1G091660.1 , HORVU1Hr1G088880.2 , HORVU1Hr1G088880.1 , HORVU5Hr1G124160.1 , HORVU5Hr1G087250.1 , HORVU1Hr1G088930.2 , HORVU1Hr1G088930.1 , HORVU7Hr1G058120.1 , HORVU1Hr1G088870.2 , HORVU7Hr1G058120.2 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G087250.2 , HORVU6Hr1G091650.1 , HORVU7Hr1G040380.10 , HORVU7Hr1G040380.11 , HORVU1Hr1G088920.2 , HORVU1Hr1G088920.3 , HORVU6Hr1G016890.2 , HORVU1Hr1G088870.1
Wheat TraesCS5A02G322500 , TraesCS6B02G122700 , TraesCS6D02G088600 , TraesCS5B02G353200 , TraesCS6B02G122800 , TraesCS6A02G094600 , TraesCS1B02G317500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G048501 - -
2 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
3 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
4 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
5 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
6 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
7 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
8 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
9 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
10 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
11 Sobic.006G026800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
12 Sobic.004G170100 - -
13 Sobic.004G071750 - -
14 Sobic.003G138550 - -
15 Sobic.005G204000 OsGrx_C17 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
16 Sobic.010G146100 aquaporin protein, putative, expressed K09873: aquaporin TIP
17 Sobic.008G117300 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.007G221400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
19 Sobic.009G049850 - -
20 Sobic.004G352400 expressed protein -


Gene co-expression network
sample Sobic003G279400 Sobic003G279400 Sobic002G048501 Sobic002G048501 Sobic003G279400--Sobic002G048501 Sobic001G160700 Sobic001G160700 Sobic003G279400--Sobic001G160700 Sobic004G071750 Sobic004G071750 Sobic002G048501--Sobic004G071750 Sobic005G204000 Sobic005G204000 Sobic002G048501--Sobic005G204000 Sobic002G048501--Sobic001G160700 Sobic001G160700--Sobic001G160700 Sobic001G160700--Sobic004G071750
Octagon: transcription factors


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