Gene annotation
| Transcriptome id | Sobic.004G352400.2 |
|---|---|
| Synonym | Sb04g037910 |
| Functional annotation | expressed protein |
| UniProt | A0A1Z5RRH8 |
| Pfam | - |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os02g57850.1 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G048501 | - | - |
| 2 | Sobic.003G279400 | chlorophyll A-B binding protein, putative, expressed | - |
| 3 | Sobic.003G015500 | - | - |
| 4 | Sobic.006G103500 | - | - |
| 5 | Sobic.009G165200 | plant-specific domain TIGR01589 family protein, expressed | - |
| 6 | Sobic.005G191500 | ATBPM2, putative, expressed | - |
| 7 | Sobic.003G369000 | - | - |
| 8 | Sobic.002G352100 | Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08908: light-harvesting complex I chlorophyll a/b binding protein 2 |
| 9 | Sobic.004G071750 | - | - |
| 10 | Sobic.002G289100 | chlorophyll A-B binding protein, putative, expressed | - |
| 11 | Sobic.009G229700 | Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein | K02695: photosystem I subunit VI |
| 12 | Sobic.005G087000 | Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08916: light-harvesting complex II chlorophyll a/b binding protein 5 |
| 13 | Sobic.001G066600 | mTERF domain containing protein, expressed | - |
| 14 | Sobic.010G189300 | Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08909: light-harvesting complex I chlorophyll a/b binding protein 3 |
| 15 | Sobic.005G152600 | - | - |
| 16 | Sobic.008G117300 | Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 17 | Sobic.002G338000 | Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08915: light-harvesting complex II chlorophyll a/b binding protein 4 |
| 18 | Sobic.007G136900 | Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08910: light-harvesting complex I chlorophyll a/b binding protein 4 |
| 19 | Sobic.001G046900 | Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed | K02692: photosystem I subunit II |
| 20 | Sobic.001G465000 | - | - |
Gene co-expression network
Octagon: transcription factors
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