Gene annotation
Transcriptome id Sobic.002G289100.1
Synonym LHCB1.3, Sb02g032090, CAB1, CAB140, AB140
Functional annotation chlorophyll A-B binding protein, putative, expressed
UniProt C5X7M5
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT2G34430 : light-harvesting chlorophyll-protein complex II subunit B1
RAP-DB (Rice) LOC_Os09g17740.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a047961 , Zm00025a038456 , Zm00025a036624 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028626 , Zm00025a028624
Brachypodium KQK14298 , KQK13732 , KQJ91372 , KQJ86724 , KQK04837 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU5Hr1G109260.2 , HORVU5Hr1G109260.1 , HORVU5Hr1G109250.1 , HORVU1Hr1G088880.2 , HORVU1Hr1G088880.1 , HORVU5Hr1G124160.1 , HORVU1Hr1G089180.1 , HORVU7Hr1G058120.1 , HORVU1Hr1G088870.2 , HORVU7Hr1G058120.2 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G109360.2 , HORVU5Hr1G109360.1 , HORVU5Hr1G087250.2 , HORVU5Hr1G087250.1 , HORVU6Hr1G016890.1 , HORVU6Hr1G016890.2 , HORVU6Hr1G016890.3 , HORVU6Hr1G016890.4 , HORVU6Hr1G016890.5 , HORVU6Hr1G016890.6 , HORVU1Hr1G088870.1
Wheat TraesCS5D02G329200 , TraesCS5A02G322500 , TraesCS5B02G462900 , TraesCS5B02G322900 , TraesCS5B02G353200 , TraesCS1D02G375000 , TraesCS5A02G454400 , TraesCS1B02G317500
Populus PNT05290


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
2 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
3 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
4 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
5 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
6 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
7 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
8 Sobic.001G268850 - -
9 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
10 Sobic.003G369000 - -
11 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
12 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
13 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
14 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
15 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
16 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
17 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
18 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
19 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
20 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -


Gene co-expression network
sample Sobic002G289100 Sobic002G289100 Sobic002G288300 Sobic002G288300 Sobic002G289100--Sobic002G288300 Sobic002G352100 Sobic002G352100 Sobic002G289100--Sobic002G352100 Sobic002G338000 Sobic002G338000 Sobic002G289100--Sobic002G338000 Sobic003G055300 Sobic003G055300 Sobic002G289100--Sobic003G055300 Sobic010G000500 Sobic010G000500 Sobic002G289100--Sobic010G000500 Sobic001G206200 Sobic001G206200 Sobic002G289100--Sobic001G206200 Sobic002G414400 Sobic002G414400 Sobic002G289100--Sobic002G414400 Sobic001G268850 Sobic001G268850 Sobic002G289100--Sobic001G268850 Sobic009G165200 Sobic009G165200 Sobic002G289100--Sobic009G165200 Sobic009G091800 Sobic009G091800 Sobic002G288300--Sobic009G091800 Sobic010G022100 Sobic010G022100 Sobic002G288300--Sobic010G022100 Sobic002G288300--Sobic010G000500 Sobic004G234200 Sobic004G234200 Sobic002G288300--Sobic004G234200 Sobic002G288300--Sobic002G338000 Sobic002G288300--Sobic002G414400 Sobic010G011800 Sobic010G011800 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic006G264900 Sobic006G264900 Sobic002G288300--Sobic006G264900 Sobic001G046900 Sobic001G046900 Sobic002G352100--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic002G352100--Sobic007G136900 Sobic010G189300 Sobic010G189300 Sobic002G352100--Sobic010G189300 Sobic002G352100--Sobic002G338000 Sobic005G087000 Sobic005G087000 Sobic002G352100--Sobic005G087000 Sobic002G352100--Sobic003G055300 Sobic002G352100--Sobic009G165200 Sobic009G229700 Sobic009G229700 Sobic002G352100--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic002G352100--Sobic004G235200 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G030200 Sobic002G030200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic002G338000--Sobic001G177000 Sobic009G234600 Sobic009G234600 Sobic002G338000--Sobic009G234600 Sobic003G055300--Sobic002G338000 Sobic003G055300--Sobic001G206200 Sobic003G055300--Sobic010G000500 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic003G055300--Sobic005G087000 Sobic003G055300--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic003G055300--Sobic002G242000 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G297300 Sobic002G297300 Sobic002G414400--Sobic002G297300 Sobic002G414400--Sobic002G288300 Sobic001G268850--Sobic003G055300 Sobic001G269000 Sobic001G269000 Sobic001G268850--Sobic001G269000 Sobic001G268850--Sobic001G206200 Sobic001G268850--Sobic009G165200 Sobic001G268850--Sobic002G338000 Sobic001G268850--Sobic002G289100 Sobic001G268850--Sobic002G352100 Sobic001G268850--Sobic010G000500 Sobic001G268850--Sobic002G414400 Sobic009G165200--Sobic002G352100 Sobic009G165200--Sobic009G229700 Sobic009G165200--Sobic005G087000 Sobic005G152600 Sobic005G152600 Sobic009G165200--Sobic005G152600 Sobic009G165200--Sobic010G189300 Sobic001G066600 Sobic001G066600 Sobic009G165200--Sobic001G066600 Sobic009G165200--Sobic003G055300 Sobic009G165200--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic009G165200--Sobic006G073500
Octagon: transcription factors


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