Gene annotation
Transcriptome id Sobic.004G113500.2
Synonym
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1Z5RLU1
Pfam PF13087 PF13086
Panther DB PTHR10887 PTHR10887:SF358
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65780 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g49340.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT61706 , PNT61707 , PNT61708
Barley -
Wheat TraesCS2B02G412000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G032033 - -
2 Sobic.006G246700 MBTB57 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
3 Sobic.001G183900 expressed protein -
4 Sobic.007G151650 - -
5 Sobic.005G216866 - -
6 Sobic.004G224350 - -
7 Sobic.003G072100 D-mannose binding lectin family protein, expressed -
8 Sobic.004G246950 - -
9 Sobic.005G167600 resistance protein, putative, expressed -
10 Sobic.003G268650 - -
11 Sobic.001G167701 - -
12 Sobic.001G436850 - -
13 Sobic.006G089200 expressed protein -
14 Sobic.008G146801 - -
15 Sobic.001G097300 CHCH domain containing protein, expressed -
16 Sobic.001G018700 RD26, putative, expressed -
17 Sobic.001G018700 RD26, putative, expressed -
18 Sobic.001G018700 RD26, putative, expressed -
19 Sobic.001G018700 RD26, putative, expressed -
20 Sobic.001G018700 RD26, putative, expressed -


Gene co-expression network
sample Sobic004G113500 Sobic004G113500 Sobic002G032033 Sobic002G032033 Sobic004G113500--Sobic002G032033 Sobic006G246700 Sobic006G246700 Sobic004G113500--Sobic006G246700 Sobic001G183900 Sobic001G183900 Sobic004G113500--Sobic001G183900 Sobic007G151650 Sobic007G151650 Sobic004G113500--Sobic007G151650 Sobic005G216866 Sobic005G216866 Sobic004G113500--Sobic005G216866 Sobic004G224350 Sobic004G224350 Sobic004G113500--Sobic004G224350 Sobic003G072100 Sobic003G072100 Sobic004G113500--Sobic003G072100 Sobic004G246950 Sobic004G246950 Sobic004G113500--Sobic004G246950 Sobic005G167600 Sobic005G167600 Sobic004G113500--Sobic005G167600 Sobic002G032033--Sobic001G183900 Sobic002G032033--Sobic005G216866 Sobic002G032033--Sobic004G224350 Sobic002G032033--Sobic004G246950 Sobic002G032033--Sobic005G167600 Sobic003G268650 Sobic003G268650 Sobic002G032033--Sobic003G268650 Sobic002G032033--Sobic003G072100 Sobic001G167701 Sobic001G167701 Sobic002G032033--Sobic001G167701 Sobic002G430601 Sobic002G430601 Sobic002G032033--Sobic002G430601 Sobic006G246700--Sobic007G151650 Sobic010G151325 Sobic010G151325 Sobic006G246700--Sobic010G151325 Sobic006G246700--Sobic004G113500 Sobic008G146801 Sobic008G146801 Sobic006G246700--Sobic008G146801 Sobic001G374301 Sobic001G374301 Sobic006G246700--Sobic001G374301 Sobic005G017632 Sobic005G017632 Sobic006G246700--Sobic005G017632 Sobic001G018700 Sobic001G018700 Sobic006G246700--Sobic001G018700 Sobic001G183900--Sobic003G072100 Sobic001G183900--Sobic004G246950 Sobic001G183900--Sobic002G032033 Sobic001G183900--Sobic001G018700 Sobic007G151650--Sobic001G018700 Sobic005G216866--Sobic001G183900 Sobic005G216866--Sobic002G032033 Sobic005G216866--Sobic004G246950 Sobic001G338200 Sobic001G338200 Sobic005G216866--Sobic001G338200 Sobic005G216866--Sobic004G224350 Sobic010G090550 Sobic010G090550 Sobic005G216866--Sobic010G090550 Sobic005G216866--Sobic003G072100 Sobic005G216866--Sobic005G167600 Sobic005G216866--Sobic001G018700 Sobic004G224350--Sobic001G183900 Sobic004G224350--Sobic002G032033 Sobic003G090100 Sobic003G090100 Sobic004G224350--Sobic003G090100 Sobic005G207900 Sobic005G207900 Sobic004G224350--Sobic005G207900 Sobic004G224350--Sobic005G216866 Sobic004G224350--Sobic004G246950 Sobic004G224350--Sobic003G072100 Sobic004G224350--Sobic001G018700 Sobic006G089200 Sobic006G089200 Sobic003G072100--Sobic006G089200 Sobic003G072100--Sobic001G018700 Sobic004G246950--Sobic001G183900 Sobic004G246950--Sobic003G072100 Sobic004G246950--Sobic001G018700 Sobic009G248700 Sobic009G248700 Sobic005G167600--Sobic009G248700 Sobic005G167600--Sobic001G183900 Sobic005G167600--Sobic002G032033 Sobic001G273600 Sobic001G273600 Sobic005G167600--Sobic001G273600 Sobic003G434500 Sobic003G434500 Sobic005G167600--Sobic003G434500 Sobic005G167600--Sobic004G246950 Sobic005G167600--Sobic003G072100 Sobic005G167600--Sobic005G216866 Sobic005G167600--Sobic004G224350
Octagon: transcription factors


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