Gene annotation
Transcriptome id Sobic.004G280500.1
Synonym Sb04g031710, NGA1
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5Y0X2
Pfam PF02362
Panther DB PTHR31140 PTHR31140:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT2G46870 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os02g45850.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056681 , Zm00025a033527 , Zm00025a041171 , Zm00025a032333 , Zm00025a000289 , Zm00025a000288 , Zm00025a000286 , Zm00025a010076 , Zm00025a023512 , Zm00025a021537 , Zm00025a000291
Brachypodium KQK00795 , KQJ84190 , PNT61705 , KQK20030 , PNT69241
Barley HORVU4Hr1G084950.1 , HORVU4Hr1G084950.2 , HORVU4Hr1G084950.3 , HORVU0Hr1G022200.1 , HORVU0Hr1G022200.2 , HORVU0Hr1G022200.3 , HORVU1Hr1G082670.10 , HORVU5Hr1G012420.2 , HORVU5Hr1G012420.3 , HORVU5Hr1G012420.1 , HORVU5Hr1G012420.6 , HORVU5Hr1G012420.7 , HORVU5Hr1G012420.8 , HORVU7Hr1G046950.1 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU1Hr1G082670.1 , HORVU7Hr1G002230.1 , HORVU6Hr1G066190.2 , HORVU6Hr1G066190.1 , HORVU1Hr1G051780.2
Wheat TraesCS7D02G022400 , TraesCS4A02G464900 , TraesCS4D02G348900 , TraesCS4D02G348900 , TraesCS7A02G020800 , TraesCS5A02G524700 , TraesCS5A02G524700 , TraesCS1B02G215000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G186600 ubiquitin carboxyl-terminal hydrolase family protein, expressed -
2 Sobic.004G000800 ZOS7-01 - C2H2 zinc finger protein, expressed -
3 Sobic.001G313800 B3 DNA binding domain containing protein, expressed -
4 Sobic.002G346700 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
6 Sobic.010G220800 zinc-binding protein, putative, expressed -
7 Sobic.006G006400 expressed protein -
8 Sobic.010G130900 glycine rich protein family protein, putative, expressed -
9 Sobic.001G123650 - -
10 Sobic.001G123650 - -
11 Sobic.001G123650 - -
12 Sobic.001G123650 - -
13 Sobic.001G123650 - -
14 Sobic.001G123650 - -
15 Sobic.001G123650 - -
16 Sobic.001G123650 - -
17 Sobic.001G123650 - -
18 Sobic.001G123650 - -
19 Sobic.001G123650 - -
20 Sobic.001G123650 - -


Gene co-expression network
sample Sobic004G280500 Sobic004G280500 Sobic001G186600 Sobic001G186600 Sobic004G280500--Sobic001G186600 Sobic004G000800 Sobic004G000800 Sobic004G280500--Sobic004G000800 Sobic001G313800 Sobic001G313800 Sobic004G280500--Sobic001G313800 Sobic002G346700 Sobic002G346700 Sobic004G280500--Sobic002G346700 Sobic002G268300 Sobic002G268300 Sobic004G280500--Sobic002G268300 Sobic010G220800 Sobic010G220800 Sobic004G280500--Sobic010G220800 Sobic006G006400 Sobic006G006400 Sobic004G280500--Sobic006G006400 Sobic010G130900 Sobic010G130900 Sobic004G280500--Sobic010G130900 Sobic001G123650 Sobic001G123650 Sobic004G280500--Sobic001G123650 Sobic003G066700 Sobic003G066700 Sobic001G186600--Sobic003G066700 Sobic005G125000 Sobic005G125000 Sobic001G186600--Sobic005G125000 Sobic002G289000 Sobic002G289000 Sobic001G186600--Sobic002G289000 Sobic001G186600--Sobic004G280500 Sobic005G162900 Sobic005G162900 Sobic001G186600--Sobic005G162900 Sobic005G163100 Sobic005G163100 Sobic001G186600--Sobic005G163100 Sobic004G111000 Sobic004G111000 Sobic001G186600--Sobic004G111000 Sobic004G313500 Sobic004G313500 Sobic001G186600--Sobic004G313500 Sobic001G090800 Sobic001G090800 Sobic001G186600--Sobic001G090800 Sobic004G000800--Sobic002G268300 Sobic004G000800--Sobic001G313800 Sobic004G000800--Sobic001G123650 Sobic001G313800--Sobic002G346700 Sobic004G254300 Sobic004G254300 Sobic001G313800--Sobic004G254300 Sobic004G056500 Sobic004G056500 Sobic001G313800--Sobic004G056500 Sobic002G023500 Sobic002G023500 Sobic001G313800--Sobic002G023500 Sobic001G313800--Sobic002G268300 Sobic001G313800--Sobic010G130900 Sobic004G316000 Sobic004G316000 Sobic001G313800--Sobic004G316000 Sobic010G144600 Sobic010G144600 Sobic001G313800--Sobic010G144600 Sobic002G102800 Sobic002G102800 Sobic001G313800--Sobic002G102800 Sobic002G346700--Sobic004G316000 Sobic002G258500 Sobic002G258500 Sobic002G346700--Sobic002G258500 Sobic002G346700--Sobic002G023500 Sobic002G346700--Sobic010G130900 Sobic002G066350 Sobic002G066350 Sobic002G346700--Sobic002G066350 Sobic007G014300 Sobic007G014300 Sobic002G346700--Sobic007G014300 Sobic002G346700--Sobic001G123650 Sobic002G268300--Sobic004G000800 Sobic002G268300--Sobic001G313800 Sobic003G238800 Sobic003G238800 Sobic002G268300--Sobic003G238800 Sobic002G268300--Sobic010G220800 Sobic002G268300--Sobic004G254300 Sobic002G426000 Sobic002G426000 Sobic002G268300--Sobic002G426000 Sobic002G344201 Sobic002G344201 Sobic002G268300--Sobic002G344201 Sobic002G268300--Sobic004G056500 Sobic003G231000 Sobic003G231000 Sobic002G268300--Sobic003G231000 Sobic010G220800--Sobic001G313800 Sobic010G220800--Sobic004G254300 Sobic007G218400 Sobic007G218400 Sobic010G220800--Sobic007G218400 Sobic010G220800--Sobic002G268300 Sobic010G169200 Sobic010G169200 Sobic010G220800--Sobic010G169200 Sobic009G059800 Sobic009G059800 Sobic010G220800--Sobic009G059800 Sobic009G059932 Sobic009G059932 Sobic010G220800--Sobic009G059932 Sobic009G059866 Sobic009G059866 Sobic010G220800--Sobic009G059866 Sobic010G220800--Sobic002G102800 Sobic006G239600 Sobic006G239600 Sobic006G006400--Sobic006G239600 Sobic006G006400--Sobic001G123650 Sobic010G130900--Sobic002G023500 Sobic010G130900--Sobic007G014300 Sobic010G130900--Sobic006G239600 Sobic010G130900--Sobic001G123650 Sobic001G123650--Sobic001G123650
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.