Gene annotation
Transcriptome id Sobic.005G110466.1
Synonym -
Functional annotation -
UniProt C6JRJ9 , A0A125QUJ8
Pfam PF00854
Panther DB PTHR11654 PTHR11654:SF182
NCBI CDD KOG1237; H+/oligopeptide symporter
KEGG Orthology K14638; SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G16180 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os11g23890.1 : peptide transporter PTR2, putative, expressed
MaizeGDB (Corn) Zm00025a015623
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G357950 - -
2 Sobic.004G256400 glycosyltransferase, putative, expressed -
3 Sobic.010G200200 AP2 domain containing protein, expressed -
4 Sobic.004G142000 - -
5 Sobic.001G259250 - -
6 Sobic.005G153200 - -
7 Sobic.002G338600 expressed protein -
8 Sobic.007G205100 AP2 domain containing protein, expressed -
9 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.010G200400 AP2 domain containing protein, expressed -
11 Sobic.008G081700 - -
12 Sobic.006G051750 - -
13 Sobic.001G297800 expressed protein -
14 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
16 Sobic.004G261000 expressed protein -
17 Sobic.009G116500 esterase, putative, expressed -
18 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.005G193700 - -
20 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -


Gene co-expression network
sample Sobic005G110466 Sobic005G110466 Sobic002G357950 Sobic002G357950 Sobic005G110466--Sobic002G357950 Sobic004G256400 Sobic004G256400 Sobic005G110466--Sobic004G256400 Sobic010G200200 Sobic010G200200 Sobic005G110466--Sobic010G200200 Sobic004G142000 Sobic004G142000 Sobic005G110466--Sobic004G142000 Sobic001G259250 Sobic001G259250 Sobic005G110466--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic005G110466--Sobic005G153200 Sobic002G338600 Sobic002G338600 Sobic005G110466--Sobic002G338600 Sobic007G205100 Sobic007G205100 Sobic005G110466--Sobic007G205100 Sobic002G028100 Sobic002G028100 Sobic005G110466--Sobic002G028100 Sobic003G325800 Sobic003G325800 Sobic002G357950--Sobic003G325800 Sobic005G176800 Sobic005G176800 Sobic002G357950--Sobic005G176800 Sobic001G274025 Sobic001G274025 Sobic002G357950--Sobic001G274025 Sobic001G284700 Sobic001G284700 Sobic002G357950--Sobic001G284700 Sobic006G264800 Sobic006G264800 Sobic002G357950--Sobic006G264800 Sobic001G489075 Sobic001G489075 Sobic002G357950--Sobic001G489075 Sobic009G021400 Sobic009G021400 Sobic002G357950--Sobic009G021400 Sobic002G409300 Sobic002G409300 Sobic002G357950--Sobic002G409300 Sobic002G172100 Sobic002G172100 Sobic002G357950--Sobic002G172100 Sobic004G261000 Sobic004G261000 Sobic004G256400--Sobic004G261000 Sobic001G158600 Sobic001G158600 Sobic004G256400--Sobic001G158600 Sobic005G193700 Sobic005G193700 Sobic004G256400--Sobic005G193700 Sobic006G051750 Sobic006G051750 Sobic004G256400--Sobic006G051750 Sobic007G034900 Sobic007G034900 Sobic004G256400--Sobic007G034900 Sobic004G256400--Sobic005G153200 Sobic004G256400--Sobic001G259250 Sobic004G256400--Sobic004G142000 Sobic001G253400 Sobic001G253400 Sobic004G256400--Sobic001G253400 Sobic010G200200--Sobic001G259250 Sobic010G200200--Sobic005G153200 Sobic010G200200--Sobic004G142000 Sobic010G200200--Sobic002G338600 Sobic010G200200--Sobic007G205100 Sobic008G081700 Sobic008G081700 Sobic010G200200--Sobic008G081700 Sobic010G200200--Sobic002G028100 Sobic010G200200--Sobic006G051750 Sobic010G200400 Sobic010G200400 Sobic010G200200--Sobic010G200400 Sobic004G142000--Sobic001G259250 Sobic004G142000--Sobic005G153200 Sobic004G142000--Sobic010G200200 Sobic004G142000--Sobic006G051750 Sobic004G142000--Sobic002G338600 Sobic004G142000--Sobic004G261000 Sobic004G142000--Sobic008G081700 Sobic004G142000--Sobic007G205100 Sobic004G142000--Sobic007G034900 Sobic001G259250--Sobic005G153200 Sobic001G259250--Sobic004G142000 Sobic001G259250--Sobic010G200200 Sobic001G259250--Sobic006G051750 Sobic001G259250--Sobic002G338600 Sobic001G259250--Sobic004G261000 Sobic001G259250--Sobic008G081700 Sobic001G259250--Sobic007G205100 Sobic001G259250--Sobic007G034900 Sobic005G153200--Sobic001G259250 Sobic005G153200--Sobic004G142000 Sobic005G153200--Sobic010G200200 Sobic005G153200--Sobic006G051750 Sobic005G153200--Sobic002G338600 Sobic005G153200--Sobic004G261000 Sobic005G153200--Sobic008G081700 Sobic005G153200--Sobic007G205100 Sobic005G153200--Sobic007G034900 Sobic002G338600--Sobic007G205100 Sobic002G338600--Sobic010G200200 Sobic002G338600--Sobic008G081700 Sobic002G338600--Sobic010G200400 Sobic002G338600--Sobic002G028100 Sobic002G338600--Sobic001G259250 Sobic002G338600--Sobic005G153200 Sobic002G338600--Sobic004G142000 Sobic002G089400 Sobic002G089400 Sobic002G338600--Sobic002G089400 Sobic007G205100--Sobic010G200400 Sobic007G205100--Sobic002G338600 Sobic007G205100--Sobic002G089400 Sobic007G205100--Sobic002G028100 Sobic007G205100--Sobic010G200200 Sobic007G205100--Sobic008G081700 Sobic002G367600 Sobic002G367600 Sobic007G205100--Sobic002G367600 Sobic007G025300 Sobic007G025300 Sobic007G205100--Sobic007G025300 Sobic007G205100--Sobic001G259250 Sobic002G028100--Sobic002G367600 Sobic001G297800 Sobic001G297800 Sobic002G028100--Sobic001G297800 Sobic002G028100--Sobic002G338600 Sobic002G028100--Sobic007G205100 Sobic002G028100--Sobic002G089400 Sobic001G535900 Sobic001G535900 Sobic002G028100--Sobic001G535900 Sobic002G028100--Sobic010G200400 Sobic009G001600 Sobic009G001600 Sobic002G028100--Sobic009G001600 Sobic002G028100--Sobic010G200200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.