Gene annotation
Transcriptome id Sobic.006G189900.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PMS7
Pfam PF13639
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G43430 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g49170.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010079
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G168100 Plant PDR ABC transporter associated domain containing protein, expressed -
2 Sobic.010G062950 - -
3 Sobic.006G146150 - -
4 Sobic.006G075100 UDP-Glycosyltransferase superfamily protein(PubMedID : 26465154)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
5 Sobic.007G031500 GEX1, putative, expressed -
6 Sobic.001G543000 glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.003G111900 laccase precursor protein, putative, expressed K05909: laccase
8 Sobic.006G201350 - -
9 Sobic.009G235801 - -
10 Sobic.007G006350 - -
11 Sobic.004G235900 laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.002G231700 - -
13 Sobic.002G265900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
14 Sobic.010G212900 expressed protein -
15 Sobic.003G087600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.007G120100 ABC transporter, ATP-binding protein, putative, expressed -
17 Sobic.002G085200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
18 Sobic.001G322766 - -
19 Sobic.002G035766 - -
20 Sobic.008G148700 B3 DNA binding domain containing protein, expressed -


Gene co-expression network
sample Sobic006G189900 Sobic006G189900 Sobic002G168100 Sobic002G168100 Sobic006G189900--Sobic002G168100 Sobic010G062950 Sobic010G062950 Sobic006G189900--Sobic010G062950 Sobic006G146150 Sobic006G146150 Sobic006G189900--Sobic006G146150 Sobic006G075100 Sobic006G075100 Sobic006G189900--Sobic006G075100 Sobic007G031500 Sobic007G031500 Sobic006G189900--Sobic007G031500 Sobic001G543000 Sobic001G543000 Sobic006G189900--Sobic001G543000 Sobic003G111900 Sobic003G111900 Sobic006G189900--Sobic003G111900 Sobic006G201350 Sobic006G201350 Sobic006G189900--Sobic006G201350 Sobic009G235801 Sobic009G235801 Sobic006G189900--Sobic009G235801 Sobic002G168100--Sobic001G543000 Sobic002G168100--Sobic010G062950 Sobic002G231700 Sobic002G231700 Sobic002G168100--Sobic002G231700 Sobic002G168100--Sobic006G201350 Sobic002G168100--Sobic009G235801 Sobic002G168100--Sobic007G031500 Sobic010G212900 Sobic010G212900 Sobic002G168100--Sobic010G212900 Sobic001G452400 Sobic001G452400 Sobic002G168100--Sobic001G452400 Sobic007G100275 Sobic007G100275 Sobic002G168100--Sobic007G100275 Sobic010G062950--Sobic007G031500 Sobic010G062950--Sobic002G168100 Sobic010G062950--Sobic006G201350 Sobic006G138850 Sobic006G138850 Sobic010G062950--Sobic006G138850 Sobic010G062950--Sobic001G543000 Sobic005G141900 Sobic005G141900 Sobic010G062950--Sobic005G141900 Sobic010G062950--Sobic006G075100 Sobic004G212250 Sobic004G212250 Sobic010G062950--Sobic004G212250 Sobic010G062950--Sobic002G231700 Sobic004G238000 Sobic004G238000 Sobic006G146150--Sobic004G238000 Sobic001G074500 Sobic001G074500 Sobic006G146150--Sobic001G074500 Sobic001G461101 Sobic001G461101 Sobic006G146150--Sobic001G461101 Sobic005G208275 Sobic005G208275 Sobic006G146150--Sobic005G208275 Sobic009G026900 Sobic009G026900 Sobic006G146150--Sobic009G026900 Sobic001G221700 Sobic001G221700 Sobic006G146150--Sobic001G221700 Sobic006G146150--Sobic009G235801 Sobic003G361150 Sobic003G361150 Sobic006G146150--Sobic003G361150 Sobic009G178000 Sobic009G178000 Sobic006G146150--Sobic009G178000 Sobic006G075100--Sobic010G062950 Sobic006G075100--Sobic007G031500 Sobic006G075100--Sobic002G168100 Sobic008G079733 Sobic008G079733 Sobic006G075100--Sobic008G079733 Sobic010G185850 Sobic010G185850 Sobic006G075100--Sobic010G185850 Sobic006G075100--Sobic004G212250 Sobic006G075100--Sobic006G138850 Sobic006G075100--Sobic006G201350 Sobic008G094900 Sobic008G094900 Sobic006G075100--Sobic008G094900 Sobic007G031500--Sobic010G062950 Sobic007G031500--Sobic002G168100 Sobic007G031500--Sobic006G138850 Sobic007G031500--Sobic006G075100 Sobic007G031500--Sobic006G201350 Sobic007G031500--Sobic005G141900 Sobic007G031500--Sobic001G543000 Sobic007G031500--Sobic008G079733 Sobic003G347480 Sobic003G347480 Sobic007G031500--Sobic003G347480 Sobic008G192200 Sobic008G192200 Sobic001G543000--Sobic008G192200 Sobic001G272300 Sobic001G272300 Sobic001G543000--Sobic001G272300 Sobic010G248900 Sobic010G248900 Sobic003G111900--Sobic010G248900 Sobic003G111900--Sobic006G189900 Sobic004G255000 Sobic004G255000 Sobic003G111900--Sobic004G255000 Sobic003G072801 Sobic003G072801 Sobic003G111900--Sobic003G072801 Sobic006G174400 Sobic006G174400 Sobic003G111900--Sobic006G174400 Sobic001G254200 Sobic001G254200 Sobic003G111900--Sobic001G254200 Sobic008G024400 Sobic008G024400 Sobic003G111900--Sobic008G024400 Sobic004G252700 Sobic004G252700 Sobic003G111900--Sobic004G252700 Sobic007G071800 Sobic007G071800 Sobic003G111900--Sobic007G071800 Sobic006G201350--Sobic004G212250 Sobic006G201350--Sobic002G168100 Sobic001G177700 Sobic001G177700 Sobic006G201350--Sobic001G177700 Sobic006G201350--Sobic001G543000 Sobic002G268250 Sobic002G268250 Sobic006G201350--Sobic002G268250 Sobic002G088500 Sobic002G088500 Sobic006G201350--Sobic002G088500 Sobic007G129500 Sobic007G129500 Sobic006G201350--Sobic007G129500 Sobic006G201350--Sobic009G235801 Sobic006G201350--Sobic010G062950 Sobic007G059800 Sobic007G059800 Sobic009G235801--Sobic007G059800 Sobic005G057600 Sobic005G057600 Sobic009G235801--Sobic005G057600 Sobic001G025201 Sobic001G025201 Sobic009G235801--Sobic001G025201 Sobic003G372950 Sobic003G372950 Sobic009G235801--Sobic003G372950 Sobic004G201200 Sobic004G201200 Sobic009G235801--Sobic004G201200 Sobic004G286450 Sobic004G286450 Sobic009G235801--Sobic004G286450 Sobic003G064000 Sobic003G064000 Sobic009G235801--Sobic003G064000 Sobic001G062200 Sobic001G062200 Sobic009G235801--Sobic001G062200 Sobic005G181700 Sobic005G181700 Sobic009G235801--Sobic005G181700
Octagon: transcription factors


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