Gene annotation
Transcriptome id Sobic.003G111900.1,Sobic.003G111900.2
Synonym Sb03g009410, LAC7
Functional annotation laccase precursor protein, putative, expressed
UniProt C5XFQ7 , A0A1W0VWV5
Pfam PF00394 PF07732 PF07731
Panther DB PTHR11709 PTHR11709:SF86
NCBI CDD KOG1263; Multicopper oxidases
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT3G09220 : laccase 7
RAP-DB (Rice) LOC_Os11g42200.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a023909 , Zm00025a057137
Brachypodium KQK13503 , KQJ93027 , KQJ93028 , KQJ99779 , KQJ87542 , KQJ87543 , PNT65768 , KQJ96291
Barley HORVU1Hr1G019750.2 , HORVU3Hr1G097860.3 , HORVU3Hr1G097860.2 , HORVU3Hr1G097860.1 , HORVU3Hr1G097860.4 , HORVU6Hr1G088750.1 , HORVU1Hr1G019750.1 , HORVU1Hr1G019750.3 , HORVU1Hr1G019740.4 , HORVU1Hr1G019740.2 , HORVU1Hr1G019740.3 , HORVU1Hr1G019740.1
Wheat TraesCS6D02G361600 , TraesCS6B02G414100 , TraesCS6A02G058300 , TraesCS6A02G376300 , TraesCS6B02G074200 , TraesCS3A02G452600 , TraesCS6D02G361500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.006G189900 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
4 Sobic.003G072801 - -
5 Sobic.006G174400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
6 Sobic.001G254200 "OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659839)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -
8 Sobic.004G252700 - -
9 Sobic.007G071800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.003G087600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G235900 laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.002G085200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
13 Sobic.006G107100 purine permease, putative, expressed -
14 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G214400 amino acid permease family protein, putative, expressed -
16 Sobic.002G100700 expressed protein -
17 Sobic.002G107800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
18 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
19 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic003G111900 Sobic003G111900 Sobic010G248900 Sobic010G248900 Sobic003G111900--Sobic010G248900 Sobic006G189900 Sobic006G189900 Sobic003G111900--Sobic006G189900 Sobic004G255000 Sobic004G255000 Sobic003G111900--Sobic004G255000 Sobic003G072801 Sobic003G072801 Sobic003G111900--Sobic003G072801 Sobic006G174400 Sobic006G174400 Sobic003G111900--Sobic006G174400 Sobic001G254200 Sobic001G254200 Sobic003G111900--Sobic001G254200 Sobic008G024400 Sobic008G024400 Sobic003G111900--Sobic008G024400 Sobic004G252700 Sobic004G252700 Sobic003G111900--Sobic004G252700 Sobic007G071800 Sobic007G071800 Sobic003G111900--Sobic007G071800 Sobic001G249300 Sobic001G249300 Sobic010G248900--Sobic001G249300 Sobic006G030700 Sobic006G030700 Sobic010G248900--Sobic006G030700 Sobic001G512800 Sobic001G512800 Sobic010G248900--Sobic001G512800 Sobic005G018500 Sobic005G018500 Sobic010G248900--Sobic005G018500 Sobic009G054500 Sobic009G054500 Sobic010G248900--Sobic009G054500 Sobic003G259200 Sobic003G259200 Sobic010G248900--Sobic003G259200 Sobic001G280200 Sobic001G280200 Sobic010G248900--Sobic001G280200 Sobic009G226300 Sobic009G226300 Sobic010G248900--Sobic009G226300 Sobic006G100332 Sobic006G100332 Sobic010G248900--Sobic006G100332 Sobic002G168100 Sobic002G168100 Sobic006G189900--Sobic002G168100 Sobic010G062950 Sobic010G062950 Sobic006G189900--Sobic010G062950 Sobic006G146150 Sobic006G146150 Sobic006G189900--Sobic006G146150 Sobic006G075100 Sobic006G075100 Sobic006G189900--Sobic006G075100 Sobic007G031500 Sobic007G031500 Sobic006G189900--Sobic007G031500 Sobic001G543000 Sobic001G543000 Sobic006G189900--Sobic001G543000 Sobic006G189900--Sobic003G111900 Sobic006G201350 Sobic006G201350 Sobic006G189900--Sobic006G201350 Sobic009G235801 Sobic009G235801 Sobic006G189900--Sobic009G235801 Sobic009G029600 Sobic009G029600 Sobic004G255000--Sobic009G029600 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G260000 Sobic004G260000 Sobic004G255000--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic004G255000--Sobic003G219600 Sobic005G152100 Sobic005G152100 Sobic004G255000--Sobic005G152100 Sobic003G034800 Sobic003G034800 Sobic003G072801--Sobic003G034800 Sobic009G239700 Sobic009G239700 Sobic003G072801--Sobic009G239700 Sobic004G276166 Sobic004G276166 Sobic003G072801--Sobic004G276166 Sobic010G263950 Sobic010G263950 Sobic003G072801--Sobic010G263950 Sobic010G135700 Sobic010G135700 Sobic003G072801--Sobic010G135700 Sobic001G355850 Sobic001G355850 Sobic003G072801--Sobic001G355850 Sobic001G538275 Sobic001G538275 Sobic003G072801--Sobic001G538275 Sobic005G028000 Sobic005G028000 Sobic003G072801--Sobic005G028000 Sobic003G072801--Sobic003G111900 Sobic002G195000 Sobic002G195000 Sobic006G174400--Sobic002G195000 Sobic001G132000 Sobic001G132000 Sobic006G174400--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic006G174400--Sobic003G061400 Sobic004G333200 Sobic004G333200 Sobic006G174400--Sobic004G333200 Sobic006G127100 Sobic006G127100 Sobic006G174400--Sobic006G127100 Sobic002G304000 Sobic002G304000 Sobic006G174400--Sobic002G304000 Sobic003G087200 Sobic003G087200 Sobic006G174400--Sobic003G087200 Sobic003G184900 Sobic003G184900 Sobic006G174400--Sobic003G184900 Sobic010G210200 Sobic010G210200 Sobic006G174400--Sobic010G210200 Sobic004G236600 Sobic004G236600 Sobic001G254200--Sobic004G236600 Sobic004G102400 Sobic004G102400 Sobic001G254200--Sobic004G102400 Sobic001G151800 Sobic001G151800 Sobic001G254200--Sobic001G151800 Sobic003G348400 Sobic003G348400 Sobic001G254200--Sobic003G348400 Sobic001G254200--Sobic008G024400 Sobic009G236200 Sobic009G236200 Sobic001G254200--Sobic009G236200 Sobic001G212000 Sobic001G212000 Sobic001G254200--Sobic001G212000 Sobic005G215900 Sobic005G215900 Sobic001G254200--Sobic005G215900 Sobic001G254200--Sobic005G152100 Sobic008G024400--Sobic005G152100 Sobic004G246200 Sobic004G246200 Sobic008G024400--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic008G024400--Sobic001G412700 Sobic008G024400--Sobic004G255000 Sobic008G024400--Sobic004G236600 Sobic008G024400--Sobic001G249300 Sobic008G024400--Sobic001G280200 Sobic008G024400--Sobic001G212000 Sobic008G024400--Sobic005G215900 Sobic004G235900 Sobic004G235900 Sobic004G252700--Sobic004G235900 Sobic008G148700 Sobic008G148700 Sobic004G252700--Sobic008G148700 Sobic005G026300 Sobic005G026300 Sobic004G252700--Sobic005G026300 Sobic003G087600 Sobic003G087600 Sobic004G252700--Sobic003G087600 Sobic002G057550 Sobic002G057550 Sobic004G252700--Sobic002G057550 Sobic002G266100 Sobic002G266100 Sobic004G252700--Sobic002G266100 Sobic003G248700 Sobic003G248700 Sobic004G252700--Sobic003G248700 Sobic006G178200 Sobic006G178200 Sobic004G252700--Sobic006G178200 Sobic004G252700--Sobic003G111900 Sobic007G225900 Sobic007G225900 Sobic007G071800--Sobic007G225900 Sobic004G050200 Sobic004G050200 Sobic007G071800--Sobic004G050200 Sobic001G182500 Sobic001G182500 Sobic007G071800--Sobic001G182500 Sobic002G266200 Sobic002G266200 Sobic007G071800--Sobic002G266200 Sobic001G491800 Sobic001G491800 Sobic007G071800--Sobic001G491800 Sobic009G140150 Sobic009G140150 Sobic007G071800--Sobic009G140150 Sobic001G150200 Sobic001G150200 Sobic007G071800--Sobic001G150200 Sobic003G105800 Sobic003G105800 Sobic007G071800--Sobic003G105800 Sobic002G100700 Sobic002G100700 Sobic007G071800--Sobic002G100700
Octagon: transcription factors


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