Gene annotation
Transcriptome id Sobic.008G125300.1
Synonym RPA70B, ATRPA70B
Functional annotation expressed protein
UniProt C5YPL4
Pfam PF02721
Panther DB PTHR23273 PTHR23273:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08020 : RPA70-kDa subunit B
RAP-DB (Rice) LOC_Os07g02230.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G417900 nucleotidyltransferase, putative, expressed -
2 Sobic.005G188000 no apical meristem protein, putative, expressed -
3 Sobic.002G088000 cytokinin-N-glucosyltransferase 1, putative, expressed -
4 Sobic.003G156100 OsFBX117 - F-box domain containing protein, expressed -
5 Sobic.004G085100 mitochondrial carrier protein, putative, expressed -
6 Sobic.001G362900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
7 Sobic.003G350900 homeobox domain containing protein, expressed -
8 Sobic.004G116200 expressed protein -
9 Sobic.004G171500 basic helix-loop-helix, putative, expressed -
10 Sobic.008G064000 LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.009G061800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
12 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
13 Sobic.001G297800 expressed protein -
14 Sobic.010G034900 expressed protein -
15 Sobic.009G086800 no apical meristem protein, putative, expressed -
16 Sobic.008G176600 expressed protein -
17 Sobic.006G018400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
18 Sobic.007G083300 paired amphipathic helix repeat-containing protein, putative, expressed -
19 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
20 Sobic.009G116500 esterase, putative, expressed -


Gene co-expression network
sample Sobic008G125300 Sobic008G125300 Sobic002G417900 Sobic002G417900 Sobic008G125300--Sobic002G417900 Sobic005G188000 Sobic005G188000 Sobic008G125300--Sobic005G188000 Sobic002G088000 Sobic002G088000 Sobic008G125300--Sobic002G088000 Sobic003G156100 Sobic003G156100 Sobic008G125300--Sobic003G156100 Sobic004G085100 Sobic004G085100 Sobic008G125300--Sobic004G085100 Sobic001G362900 Sobic001G362900 Sobic008G125300--Sobic001G362900 Sobic003G350900 Sobic003G350900 Sobic008G125300--Sobic003G350900 Sobic004G116200 Sobic004G116200 Sobic008G125300--Sobic004G116200 Sobic004G171500 Sobic004G171500 Sobic008G125300--Sobic004G171500 Sobic002G417900--Sobic001G362900 Sobic002G417900--Sobic004G085100 Sobic009G116500 Sobic009G116500 Sobic002G417900--Sobic009G116500 Sobic001G297800 Sobic001G297800 Sobic002G417900--Sobic001G297800 Sobic002G417900--Sobic003G156100 Sobic002G417900--Sobic004G171500 Sobic002G089400 Sobic002G089400 Sobic002G417900--Sobic002G089400 Sobic008G176600 Sobic008G176600 Sobic002G417900--Sobic008G176600 Sobic002G417900--Sobic002G088000 Sobic005G188000--Sobic003G350900 Sobic005G188000--Sobic002G088000 Sobic008G064000 Sobic008G064000 Sobic005G188000--Sobic008G064000 Sobic005G188000--Sobic003G156100 Sobic005G188000--Sobic004G085100 Sobic005G188000--Sobic004G116200 Sobic001G259300 Sobic001G259300 Sobic005G188000--Sobic001G259300 Sobic007G083300 Sobic007G083300 Sobic005G188000--Sobic007G083300 Sobic005G188000--Sobic001G362900 Sobic002G088000--Sobic004G085100 Sobic002G088000--Sobic001G362900 Sobic002G088000--Sobic004G116200 Sobic002G088000--Sobic005G188000 Sobic002G088000--Sobic004G171500 Sobic008G001700 Sobic008G001700 Sobic002G088000--Sobic008G001700 Sobic002G088000--Sobic003G350900 Sobic002G088000--Sobic002G417900 Sobic002G088000--Sobic003G156100 Sobic003G156100--Sobic008G064000 Sobic003G156100--Sobic001G297800 Sobic006G018400 Sobic006G018400 Sobic003G156100--Sobic006G018400 Sobic001G535900 Sobic001G535900 Sobic003G156100--Sobic001G535900 Sobic002G211700 Sobic002G211700 Sobic003G156100--Sobic002G211700 Sobic003G156100--Sobic007G083300 Sobic003G247700 Sobic003G247700 Sobic003G156100--Sobic003G247700 Sobic002G367600 Sobic002G367600 Sobic003G156100--Sobic002G367600 Sobic003G156100--Sobic005G188000 Sobic004G085100--Sobic001G362900 Sobic004G085100--Sobic002G088000 Sobic004G085100--Sobic004G171500 Sobic004G085100--Sobic004G116200 Sobic004G085100--Sobic002G417900 Sobic004G085100--Sobic008G001700 Sobic008G071900 Sobic008G071900 Sobic004G085100--Sobic008G071900 Sobic004G085100--Sobic005G188000 Sobic004G085100--Sobic003G156100 Sobic001G362900--Sobic004G085100 Sobic001G362900--Sobic004G171500 Sobic001G362900--Sobic002G088000 Sobic001G362900--Sobic008G001700 Sobic001G362900--Sobic008G071900 Sobic001G362900--Sobic004G116200 Sobic001G362900--Sobic002G417900 Sobic001G362900--Sobic009G116500 Sobic001G362900--Sobic001G297800 Sobic003G350900--Sobic005G188000 Sobic003G350900--Sobic008G064000 Sobic009G061800 Sobic009G061800 Sobic003G350900--Sobic009G061800 Sobic003G350900--Sobic001G259300 Sobic003G350900--Sobic002G088000 Sobic003G350900--Sobic003G156100 Sobic003G323000 Sobic003G323000 Sobic003G350900--Sobic003G323000 Sobic003G105600 Sobic003G105600 Sobic003G350900--Sobic003G105600 Sobic010G034900 Sobic010G034900 Sobic003G350900--Sobic010G034900 Sobic004G116200--Sobic002G088000 Sobic004G116200--Sobic008G001700 Sobic004G116200--Sobic001G362900 Sobic004G116200--Sobic004G085100 Sobic004G116200--Sobic004G171500 Sobic004G116200--Sobic005G188000 Sobic009G086800 Sobic009G086800 Sobic004G116200--Sobic009G086800 Sobic004G116200--Sobic008G071900 Sobic004G116200--Sobic003G350900 Sobic004G171500--Sobic001G362900 Sobic004G171500--Sobic008G071900 Sobic004G171500--Sobic008G001700 Sobic004G171500--Sobic004G085100 Sobic004G171500--Sobic004G116200 Sobic010G102900 Sobic010G102900 Sobic004G171500--Sobic010G102900 Sobic004G171500--Sobic002G088000 Sobic004G171500--Sobic002G417900 Sobic004G171500--Sobic009G116500
Octagon: transcription factors


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