Gene annotation
Transcriptome id Sobic.008G143600.1
Synonym Sb08g019390
Functional annotation expressed protein
UniProt A0A1Z5R6P2
Pfam PF04788
Panther DB PTHR31300 PTHR31300:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19540 : Protein of unknown function (DUF620)
RAP-DB (Rice) LOC_Os12g39160.1 : expressed protein
MaizeGDB (Corn) Zm00025a004377 , Zm00025a017322 , Zm00025a052214 , Zm00025a048608 , Zm00025a015078
Brachypodium KQJ86133
Barley HORVU5Hr1G018870.9 , HORVU5Hr1G018870.8 , HORVU4Hr1G013190.12 , HORVU4Hr1G013190.10 , HORVU4Hr1G013190.11 , HORVU5Hr1G018870.3 , HORVU5Hr1G018870.2 , HORVU5Hr1G018870.1 , HORVU5Hr1G018870.7 , HORVU5Hr1G018870.6 , HORVU5Hr1G018870.5 , HORVU5Hr1G018870.4 , HORVU4Hr1G013190.4 , HORVU4Hr1G013190.5 , HORVU4Hr1G013190.6 , HORVU4Hr1G013190.7 , HORVU4Hr1G013190.1 , HORVU4Hr1G013190.2 , HORVU4Hr1G013190.3 , HORVU5Hr1G018870.10 , HORVU4Hr1G013190.8 , HORVU4Hr1G013190.9
Wheat TraesCS4D02G076200 , TraesCS4B02G077800 , TraesCS5D02G085100 , TraesCS5B02G078600 , TraesCS5B02G078600 , TraesCS2D02G192800 , TraesCS5A02G072300 , TraesCS4A02G237300 , TraesCS2A02G194900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
2 Sobic.002G246000 expressed protein -
3 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
5 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
6 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -
7 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
8 Sobic.002G209800 ZOS9-11 - C2H2 zinc finger protein, expressed -
9 Sobic.010G165100 expressed protein -
10 Sobic.002G064400 expressed protein -
11 Sobic.009G059100 Cupin domain containing protein, expressed -
12 Sobic.003G120500 transmembrane protein 136, putative, expressed -
13 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
14 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
15 Sobic.007G142300 expressed protein -
16 Sobic.009G130800 tat pathway signal sequence family protein, expressed -
17 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
18 Sobic.002G033000 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.001G389600 expressed protein -
20 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -


Gene co-expression network
sample Sobic008G143600 Sobic008G143600 Sobic009G055900 Sobic009G055900 Sobic008G143600--Sobic009G055900 Sobic002G246000 Sobic002G246000 Sobic008G143600--Sobic002G246000 Sobic002G377300 Sobic002G377300 Sobic008G143600--Sobic002G377300 Sobic008G008500 Sobic008G008500 Sobic008G143600--Sobic008G008500 Sobic004G109000 Sobic004G109000 Sobic008G143600--Sobic004G109000 Sobic006G001400 Sobic006G001400 Sobic008G143600--Sobic006G001400 Sobic007G211100 Sobic007G211100 Sobic008G143600--Sobic007G211100 Sobic002G209800 Sobic002G209800 Sobic008G143600--Sobic002G209800 Sobic010G165100 Sobic010G165100 Sobic008G143600--Sobic010G165100 Sobic009G055900--Sobic008G143600 Sobic009G055900--Sobic002G377300 Sobic001G405000 Sobic001G405000 Sobic009G055900--Sobic001G405000 Sobic009G055900--Sobic004G109000 Sobic009G059100 Sobic009G059100 Sobic009G055900--Sobic009G059100 Sobic009G055900--Sobic006G001400 Sobic006G060500 Sobic006G060500 Sobic009G055900--Sobic006G060500 Sobic004G243400 Sobic004G243400 Sobic009G055900--Sobic004G243400 Sobic001G389600 Sobic001G389600 Sobic009G055900--Sobic001G389600 Sobic002G246000--Sobic010G165100 Sobic002G246000--Sobic001G389600 Sobic002G045200 Sobic002G045200 Sobic002G246000--Sobic002G045200 Sobic002G142500 Sobic002G142500 Sobic002G246000--Sobic002G142500 Sobic006G032800 Sobic006G032800 Sobic002G246000--Sobic006G032800 Sobic010G107200 Sobic010G107200 Sobic002G246000--Sobic010G107200 Sobic002G311000 Sobic002G311000 Sobic002G246000--Sobic002G311000 Sobic002G403000 Sobic002G403000 Sobic002G246000--Sobic002G403000 Sobic003G277200 Sobic003G277200 Sobic002G246000--Sobic003G277200 Sobic002G377300--Sobic009G055900 Sobic001G371700 Sobic001G371700 Sobic002G377300--Sobic001G371700 Sobic002G377300--Sobic010G165100 Sobic002G377300--Sobic002G142500 Sobic009G231100 Sobic009G231100 Sobic002G377300--Sobic009G231100 Sobic001G047200 Sobic001G047200 Sobic002G377300--Sobic001G047200 Sobic002G377300--Sobic008G143600 Sobic002G225000 Sobic002G225000 Sobic002G377300--Sobic002G225000 Sobic002G377300--Sobic002G246000 Sobic002G064400 Sobic002G064400 Sobic008G008500--Sobic002G064400 Sobic009G083300 Sobic009G083300 Sobic008G008500--Sobic009G083300 Sobic007G123200 Sobic007G123200 Sobic008G008500--Sobic007G123200 Sobic008G130700 Sobic008G130700 Sobic008G008500--Sobic008G130700 Sobic002G190100 Sobic002G190100 Sobic008G008500--Sobic002G190100 Sobic007G090415 Sobic007G090415 Sobic008G008500--Sobic007G090415 Sobic001G142400 Sobic001G142400 Sobic008G008500--Sobic001G142400 Sobic003G071600 Sobic003G071600 Sobic008G008500--Sobic003G071600 Sobic008G008500--Sobic006G060500 Sobic001G188600 Sobic001G188600 Sobic004G109000--Sobic001G188600 Sobic004G109000--Sobic007G211100 Sobic006G114300 Sobic006G114300 Sobic004G109000--Sobic006G114300 Sobic003G383500 Sobic003G383500 Sobic004G109000--Sobic003G383500 Sobic004G109000--Sobic009G059100 Sobic001G069500 Sobic001G069500 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic007G013400 Sobic007G013400 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300 Sobic005G196500 Sobic005G196500 Sobic006G001400--Sobic005G196500 Sobic004G001200 Sobic004G001200 Sobic006G001400--Sobic004G001200 Sobic006G001400--Sobic009G059100 Sobic005G020200 Sobic005G020200 Sobic006G001400--Sobic005G020200 Sobic010G124200 Sobic010G124200 Sobic006G001400--Sobic010G124200 Sobic003G157500 Sobic003G157500 Sobic006G001400--Sobic003G157500 Sobic006G233600 Sobic006G233600 Sobic006G001400--Sobic006G233600 Sobic006G172700 Sobic006G172700 Sobic006G001400--Sobic006G172700 Sobic005G056201 Sobic005G056201 Sobic006G001400--Sobic005G056201 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic009G001500 Sobic009G001500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic007G211100--Sobic001G188600 Sobic003G295800 Sobic003G295800 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic009G098100 Sobic009G098100 Sobic007G211100--Sobic009G098100 Sobic004G038300 Sobic004G038300 Sobic002G209800--Sobic004G038300 Sobic006G238100 Sobic006G238100 Sobic002G209800--Sobic006G238100 Sobic004G249400 Sobic004G249400 Sobic002G209800--Sobic004G249400 Sobic009G215600 Sobic009G215600 Sobic002G209800--Sobic009G215600 Sobic001G255300 Sobic001G255300 Sobic002G209800--Sobic001G255300 Sobic005G218600 Sobic005G218600 Sobic002G209800--Sobic005G218600 Sobic005G200600 Sobic005G200600 Sobic002G209800--Sobic005G200600 Sobic001G379300 Sobic001G379300 Sobic002G209800--Sobic001G379300 Sobic002G141100 Sobic002G141100 Sobic002G209800--Sobic002G141100 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic006G274866 Sobic006G274866 Sobic010G165100--Sobic006G274866 Sobic010G165100--Sobic002G403000 Sobic010G165100--Sobic006G032800 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.