Gene annotation
Transcriptome id Sobic.009G177600.2,Sobic.009G177600.7,Sobic.009G177600.6,Sobic.009G177600.4,Sobic.009G177600.8,Sobic.009G177600.1,Sobic.009G177600.5,Sobic.009G177600.3
Synonym BRCA1, ATBRCA1
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt A0A1Z5R3A2 , A0A1Z5R3V7 , A0A1Z5R445 , A0A1Z5R376 , A0A1Z5R357 , A0A1Z5R368 , A0A1Z5R345 , A0A1B6P987
Pfam PF13771 PF13771 PF00533
Panther DB PTHR13763 PTHR13763:SF2
NCBI CDD -
KEGG Orthology K10683; BRCA1-associated RING domain protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04020 : breast cancer associated RING 1,breast cancer susceptibility1
RAP-DB (Rice) LOC_Os05g40810.1,LOC_Os04g43300.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279150 - -
2 Sobic.003G294000 protein kinase domain containing protein, expressed -
3 Sobic.010G068300 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
4 Sobic.003G217000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G094000 - -
6 Sobic.002G284701 - -
7 Sobic.009G127600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.002G245600 expressed protein -
9 Sobic.010G029200 OsMADS75 - MADS-box family gene with M-alpha type-box, expressed -
10 Sobic.001G145300 - -
11 Sobic.010G208300 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
12 Sobic.008G088863 - -
13 Sobic.001G422800 aspartic proteinase nepenthesin precursor, putative, expressed -
14 Sobic.006G094400 - -
15 Sobic.010G045300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G180501 - -
17 Sobic.009G151500 cinnamoyl-CoA reductase-related, putative, expressed -
18 Sobic.006G167200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
19 Sobic.004G310000 lipase, putative, expressed -
20 Sobic.009G039400 jacalin-like lectin domain containing protein, expressed -


Gene co-expression network
sample Sobic009G177600 Sobic009G177600 Sobic004G279150 Sobic004G279150 Sobic009G177600--Sobic004G279150 Sobic003G294000 Sobic003G294000 Sobic009G177600--Sobic003G294000 Sobic010G068300 Sobic010G068300 Sobic009G177600--Sobic010G068300 Sobic003G217000 Sobic003G217000 Sobic009G177600--Sobic003G217000 Sobic009G094000 Sobic009G094000 Sobic009G177600--Sobic009G094000 Sobic002G284701 Sobic002G284701 Sobic009G177600--Sobic002G284701 Sobic009G127600 Sobic009G127600 Sobic009G177600--Sobic009G127600 Sobic002G245600 Sobic002G245600 Sobic009G177600--Sobic002G245600 Sobic010G029200 Sobic010G029200 Sobic009G177600--Sobic010G029200 Sobic004G279150--Sobic009G127600 Sobic001G145300 Sobic001G145300 Sobic004G279150--Sobic001G145300 Sobic001G422800 Sobic001G422800 Sobic004G279150--Sobic001G422800 Sobic004G279150--Sobic009G094000 Sobic006G167200 Sobic006G167200 Sobic004G279150--Sobic006G167200 Sobic004G279150--Sobic002G284701 Sobic006G019901 Sobic006G019901 Sobic004G279150--Sobic006G019901 Sobic008G088863 Sobic008G088863 Sobic004G279150--Sobic008G088863 Sobic002G165401 Sobic002G165401 Sobic004G279150--Sobic002G165401 Sobic003G294000--Sobic004G279150 Sobic003G294000--Sobic002G245600 Sobic003G294000--Sobic009G094000 Sobic002G180501 Sobic002G180501 Sobic003G294000--Sobic002G180501 Sobic003G294000--Sobic006G167200 Sobic003G294000--Sobic009G127600 Sobic003G294000--Sobic006G019901 Sobic003G294000--Sobic002G165401 Sobic001G481201 Sobic001G481201 Sobic003G294000--Sobic001G481201 Sobic010G068300--Sobic010G029200 Sobic010G045300 Sobic010G045300 Sobic010G068300--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic010G068300--Sobic010G208300 Sobic009G039400 Sobic009G039400 Sobic010G068300--Sobic009G039400 Sobic003G081400 Sobic003G081400 Sobic010G068300--Sobic003G081400 Sobic005G022600 Sobic005G022600 Sobic010G068300--Sobic005G022600 Sobic003G142900 Sobic003G142900 Sobic010G068300--Sobic003G142900 Sobic004G069600 Sobic004G069600 Sobic010G068300--Sobic004G069600 Sobic006G133650 Sobic006G133650 Sobic010G068300--Sobic006G133650 Sobic003G217000--Sobic004G279150 Sobic003G101600 Sobic003G101600 Sobic003G217000--Sobic003G101600 Sobic003G217000--Sobic001G145300 Sobic003G217000--Sobic002G284701 Sobic003G217000--Sobic009G127600 Sobic003G313700 Sobic003G313700 Sobic003G217000--Sobic003G313700 Sobic006G257500 Sobic006G257500 Sobic003G217000--Sobic006G257500 Sobic003G217000--Sobic001G422800 Sobic006G094400 Sobic006G094400 Sobic003G217000--Sobic006G094400 Sobic001G434450 Sobic001G434450 Sobic009G094000--Sobic001G434450 Sobic009G094000--Sobic006G094400 Sobic004G314750 Sobic004G314750 Sobic009G094000--Sobic004G314750 Sobic006G256801 Sobic006G256801 Sobic009G094000--Sobic006G256801 Sobic008G164525 Sobic008G164525 Sobic009G094000--Sobic008G164525 Sobic004G001900 Sobic004G001900 Sobic009G094000--Sobic004G001900 Sobic009G094000--Sobic002G165401 Sobic009G094000--Sobic004G279150 Sobic009G094000--Sobic003G101600 Sobic002G284701--Sobic001G145300 Sobic003G119266 Sobic003G119266 Sobic002G284701--Sobic003G119266 Sobic002G284701--Sobic004G279150 Sobic004G160950 Sobic004G160950 Sobic002G284701--Sobic004G160950 Sobic003G279600 Sobic003G279600 Sobic002G284701--Sobic003G279600 Sobic009G053201 Sobic009G053201 Sobic002G284701--Sobic009G053201 Sobic010G132300 Sobic010G132300 Sobic002G284701--Sobic010G132300 Sobic002G284701--Sobic010G045300 Sobic002G188100 Sobic002G188100 Sobic002G284701--Sobic002G188100 Sobic009G127600--Sobic001G145300 Sobic002G156300 Sobic002G156300 Sobic009G127600--Sobic002G156300 Sobic009G127600--Sobic004G279150 Sobic009G127600--Sobic001G481201 Sobic010G114400 Sobic010G114400 Sobic009G127600--Sobic010G114400 Sobic003G008850 Sobic003G008850 Sobic009G127600--Sobic003G008850 Sobic009G127600--Sobic006G019901 Sobic007G001300 Sobic007G001300 Sobic009G127600--Sobic007G001300 Sobic003G109400 Sobic003G109400 Sobic009G127600--Sobic003G109400 Sobic002G245600--Sobic003G294000 Sobic007G209400 Sobic007G209400 Sobic002G245600--Sobic007G209400 Sobic002G245600--Sobic009G094000 Sobic002G245600--Sobic004G279150 Sobic002G245600--Sobic009G127600 Sobic002G245600--Sobic001G434450 Sobic002G245600--Sobic006G256801 Sobic007G157200 Sobic007G157200 Sobic002G245600--Sobic007G157200 Sobic002G245600--Sobic006G167200 Sobic010G029200--Sobic009G039400 Sobic010G029200--Sobic010G208300 Sobic010G029200--Sobic010G068300 Sobic010G029200--Sobic010G045300 Sobic010G029200--Sobic004G069600 Sobic010G029200--Sobic006G133650 Sobic010G029200--Sobic003G142900 Sobic010G029200--Sobic002G188100 Sobic010G029200--Sobic003G081400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.