Gene annotation
Transcriptome id Sobic.010G190200.1
Synonym Sb10g024020
Functional annotation polygalacturonase, putative, expressed
UniProt C5Z5S9
Pfam PF12708
Panther DB PTHR31375 PTHR31375:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18180 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os06g40880.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a042133
Brachypodium KQK17685
Barley HORVU3Hr1G090110.2 , HORVU3Hr1G090110.1
Wheat TraesCS7D02G398100 , TraesCS7D02G398100 , TraesCS7B02G304200 , TraesCS7A02G404800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G110100 expressed protein -
2 Sobic.010G226300 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
3 Sobic.010G048800 expressed protein -
4 Sobic.006G079500 AMP-binding domain containing protein, expressed -
5 Sobic.003G382400 MLO domain containing protein, putative, expressed K08472: mlo protein
6 Sobic.010G062200 expressed protein -
7 Sobic.004G324500 expressed protein -
8 Sobic.001G341700 "GS3(Ortholog in rice:Mao et al., 2010(PubMedID : 31659843)@ Li et al., 2010)"(PubMedID : 32497208)@keratin-associated protein 5-4, putative, expressed -
9 Sobic.003G011700 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
10 Sobic.002G173300 BURP domain containing protein, expressed -
11 Sobic.009G074900 expressed protein -
12 Sobic.010G049600 expressed protein -
13 Sobic.010G048200 expressed protein -
14 Sobic.001G491400 cytochrome P450, putative, expressed -
15 Sobic.007G076100 transferase family protein, putative, expressed -
16 Sobic.010G053300 expressed protein -
17 Sobic.003G016000 LTPL18 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.004G118100 harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.005G226500 thaumatin family domain containing protein, expressed -
20 Sobic.005G200700 dirigent, putative, expressed -


Gene co-expression network
sample Sobic010G190200 Sobic010G190200 Sobic001G110100 Sobic001G110100 Sobic010G190200--Sobic001G110100 Sobic010G226300 Sobic010G226300 Sobic010G190200--Sobic010G226300 Sobic010G048800 Sobic010G048800 Sobic010G190200--Sobic010G048800 Sobic006G079500 Sobic006G079500 Sobic010G190200--Sobic006G079500 Sobic003G382400 Sobic003G382400 Sobic010G190200--Sobic003G382400 Sobic010G062200 Sobic010G062200 Sobic010G190200--Sobic010G062200 Sobic004G324500 Sobic004G324500 Sobic010G190200--Sobic004G324500 Sobic001G341700 Sobic001G341700 Sobic010G190200--Sobic001G341700 Sobic003G011700 Sobic003G011700 Sobic010G190200--Sobic003G011700 Sobic009G074900 Sobic009G074900 Sobic001G110100--Sobic009G074900 Sobic003G016000 Sobic003G016000 Sobic001G110100--Sobic003G016000 Sobic010G053300 Sobic010G053300 Sobic001G110100--Sobic010G053300 Sobic010G048200 Sobic010G048200 Sobic001G110100--Sobic010G048200 Sobic001G110100--Sobic010G062200 Sobic009G075000 Sobic009G075000 Sobic001G110100--Sobic009G075000 Sobic003G088200 Sobic003G088200 Sobic001G110100--Sobic003G088200 Sobic002G402233 Sobic002G402233 Sobic001G110100--Sobic002G402233 Sobic002G173300 Sobic002G173300 Sobic001G110100--Sobic002G173300 Sobic010G226300--Sobic010G048200 Sobic006G127750 Sobic006G127750 Sobic010G226300--Sobic006G127750 Sobic010G226300--Sobic001G110100 Sobic010G226300--Sobic009G074900 Sobic010G167200 Sobic010G167200 Sobic010G226300--Sobic010G167200 Sobic010G226300--Sobic002G173300 Sobic010G050100 Sobic010G050100 Sobic010G226300--Sobic010G050100 Sobic004G202800 Sobic004G202800 Sobic010G226300--Sobic004G202800 Sobic010G226300--Sobic003G016000 Sobic005G218000 Sobic005G218000 Sobic010G048800--Sobic005G218000 Sobic007G076100 Sobic007G076100 Sobic010G048800--Sobic007G076100 Sobic010G048800--Sobic001G341700 Sobic002G312200 Sobic002G312200 Sobic010G048800--Sobic002G312200 Sobic010G048800--Sobic010G048200 Sobic004G318800 Sobic004G318800 Sobic010G048800--Sobic004G318800 Sobic006G089700 Sobic006G089700 Sobic010G048800--Sobic006G089700 Sobic010G048800--Sobic006G079500 Sobic003G178500 Sobic003G178500 Sobic010G048800--Sobic003G178500 Sobic005G226500 Sobic005G226500 Sobic006G079500--Sobic005G226500 Sobic007G048500 Sobic007G048500 Sobic006G079500--Sobic007G048500 Sobic006G079500--Sobic003G016000 Sobic007G206000 Sobic007G206000 Sobic006G079500--Sobic007G206000 Sobic006G079500--Sobic003G088200 Sobic007G098600 Sobic007G098600 Sobic006G079500--Sobic007G098600 Sobic006G006900 Sobic006G006900 Sobic006G079500--Sobic006G006900 Sobic002G427550 Sobic002G427550 Sobic006G079500--Sobic002G427550 Sobic001G133200 Sobic001G133200 Sobic006G079500--Sobic001G133200 Sobic001G266100 Sobic001G266100 Sobic003G382400--Sobic001G266100 Sobic005G110900 Sobic005G110900 Sobic003G382400--Sobic005G110900 Sobic003G382400--Sobic005G218000 Sobic004G118100 Sobic004G118100 Sobic003G382400--Sobic004G118100 Sobic010G049600 Sobic010G049600 Sobic003G382400--Sobic010G049600 Sobic001G491400 Sobic001G491400 Sobic003G382400--Sobic001G491400 Sobic008G013400 Sobic008G013400 Sobic003G382400--Sobic008G013400 Sobic008G012600 Sobic008G012600 Sobic003G382400--Sobic008G012600 Sobic006G160800 Sobic006G160800 Sobic003G382400--Sobic006G160800 Sobic010G259400 Sobic010G259400 Sobic010G062200--Sobic010G259400 Sobic010G062200--Sobic009G075000 Sobic010G062200--Sobic009G074900 Sobic010G062200--Sobic010G053300 Sobic010G062200--Sobic003G088200 Sobic010G062200--Sobic003G016000 Sobic003G263800 Sobic003G263800 Sobic010G062200--Sobic003G263800 Sobic008G032400 Sobic008G032400 Sobic010G062200--Sobic008G032400 Sobic010G062200--Sobic002G427550 Sobic004G324500--Sobic002G312200 Sobic004G324500--Sobic005G218000 Sobic004G324500--Sobic003G382400 Sobic009G023900 Sobic009G023900 Sobic004G324500--Sobic009G023900 Sobic006G005900 Sobic006G005900 Sobic004G324500--Sobic006G005900 Sobic004G324500--Sobic001G341700 Sobic004G324500--Sobic007G076100 Sobic004G324500--Sobic008G013400 Sobic010G166300 Sobic010G166300 Sobic004G324500--Sobic010G166300 Sobic001G341700--Sobic007G076100 Sobic001G341700--Sobic004G318800 Sobic001G341700--Sobic005G218000 Sobic001G341700--Sobic006G079500 Sobic006G092300 Sobic006G092300 Sobic001G341700--Sobic006G092300 Sobic001G341700--Sobic006G089700 Sobic001G341700--Sobic002G312200 Sobic002G029700 Sobic002G029700 Sobic001G341700--Sobic002G029700 Sobic001G341700--Sobic003G178500 Sobic001G102600 Sobic001G102600 Sobic003G011700--Sobic001G102600 Sobic010G189366 Sobic010G189366 Sobic003G011700--Sobic010G189366 Sobic003G011700--Sobic001G491400 Sobic003G011700--Sobic010G049600 Sobic004G349150 Sobic004G349150 Sobic003G011700--Sobic004G349150 Sobic001G472400 Sobic001G472400 Sobic003G011700--Sobic001G472400 Sobic003G004900 Sobic003G004900 Sobic003G011700--Sobic003G004900 Sobic005G200700 Sobic005G200700 Sobic003G011700--Sobic005G200700 Sobic001G511600 Sobic001G511600 Sobic003G011700--Sobic001G511600
Octagon: transcription factors


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