Gene annotation
Transcriptome id Sobic.010G252100.1
Synonym Sb10g029030
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Z971
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF845
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21705 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g40750.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017490
Brachypodium KQJ97322
Barley -
Wheat TraesCS1B02G188100 , TraesCS1A02G168800 , TraesCS1D02G166800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485700 DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.001G130600 galactosyltransferase family protein, putative, expressed -
3 Sobic.010G166800 amino acid transporter, putative, expressed -
4 Sobic.006G114100 pleiotropic drug resistance protein, putative, expressed -
5 Sobic.009G005200 expressed protein -
6 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
7 Sobic.003G009000 harpin-induced protein, putative, expressed -
8 Sobic.006G077050 - -
9 Sobic.002G309100 phosphate-induced protein 1 conserved region domain containing protein, expressed -
10 Sobic.003G407700 dnaJ domain containing protein, expressed -
11 Sobic.009G098700 basic helix-loop-helix domain containing protein, expressed -
12 Sobic.010G073900 expressed protein -
13 Sobic.010G062900 expressed protein -
14 Sobic.009G220700 - -
15 Sobic.001G183666 - -
16 Sobic.004G215200 expressed protein -
17 Sobic.002G339666 - K04718: sphingosine kinase
18 Sobic.006G050100 expressed protein -
19 Sobic.001G010500 frigida, putative, expressed -
20 Sobic.002G199800 - -


Gene co-expression network
sample Sobic010G252100 Sobic010G252100 Sobic001G485700 Sobic001G485700 Sobic010G252100--Sobic001G485700 Sobic001G130600 Sobic001G130600 Sobic010G252100--Sobic001G130600 Sobic010G166800 Sobic010G166800 Sobic010G252100--Sobic010G166800 Sobic006G114100 Sobic006G114100 Sobic010G252100--Sobic006G114100 Sobic009G005200 Sobic009G005200 Sobic010G252100--Sobic009G005200 Sobic003G217800 Sobic003G217800 Sobic010G252100--Sobic003G217800 Sobic003G009000 Sobic003G009000 Sobic010G252100--Sobic003G009000 Sobic006G077050 Sobic006G077050 Sobic010G252100--Sobic006G077050 Sobic002G309100 Sobic002G309100 Sobic010G252100--Sobic002G309100 Sobic001G485700--Sobic001G130600 Sobic010G073900 Sobic010G073900 Sobic001G485700--Sobic010G073900 Sobic001G485700--Sobic010G166800 Sobic003G407700 Sobic003G407700 Sobic001G485700--Sobic003G407700 Sobic001G485700--Sobic003G009000 Sobic009G098700 Sobic009G098700 Sobic001G485700--Sobic009G098700 Sobic001G485700--Sobic006G114100 Sobic002G199800 Sobic002G199800 Sobic001G485700--Sobic002G199800 Sobic001G485700--Sobic010G252100 Sobic001G130600--Sobic001G485700 Sobic001G130600--Sobic006G114100 Sobic001G130600--Sobic003G009000 Sobic001G130600--Sobic009G098700 Sobic001G130600--Sobic010G166800 Sobic001G130600--Sobic003G407700 Sobic001G130600--Sobic010G252100 Sobic001G183666 Sobic001G183666 Sobic001G130600--Sobic001G183666 Sobic001G130600--Sobic010G073900 Sobic006G050201 Sobic006G050201 Sobic010G166800--Sobic006G050201 Sobic010G166800--Sobic006G114100 Sobic009G149100 Sobic009G149100 Sobic010G166800--Sobic009G149100 Sobic010G166800--Sobic001G485700 Sobic004G254700 Sobic004G254700 Sobic010G166800--Sobic004G254700 Sobic006G276600 Sobic006G276600 Sobic010G166800--Sobic006G276600 Sobic002G019300 Sobic002G019300 Sobic010G166800--Sobic002G019300 Sobic004G335400 Sobic004G335400 Sobic010G166800--Sobic004G335400 Sobic005G041500 Sobic005G041500 Sobic010G166800--Sobic005G041500 Sobic006G114100--Sobic001G130600 Sobic006G114100--Sobic010G166800 Sobic006G114100--Sobic001G485700 Sobic006G114100--Sobic006G050201 Sobic006G114100--Sobic010G252100 Sobic006G114100--Sobic009G005200 Sobic006G114100--Sobic006G077050 Sobic009G121200 Sobic009G121200 Sobic006G114100--Sobic009G121200 Sobic006G114100--Sobic003G009000 Sobic009G005200--Sobic010G073900 Sobic009G005200--Sobic010G166800 Sobic009G005200--Sobic003G407700 Sobic009G005200--Sobic009G121200 Sobic009G005200--Sobic006G050201 Sobic009G005200--Sobic001G485700 Sobic007G041100 Sobic007G041100 Sobic009G005200--Sobic007G041100 Sobic004G057300 Sobic004G057300 Sobic009G005200--Sobic004G057300 Sobic009G113500 Sobic009G113500 Sobic009G005200--Sobic009G113500 Sobic007G144100 Sobic007G144100 Sobic003G217800--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic003G217800--Sobic003G258100 Sobic003G352900 Sobic003G352900 Sobic003G217800--Sobic003G352900 Sobic002G299500 Sobic002G299500 Sobic003G217800--Sobic002G299500 Sobic003G018000 Sobic003G018000 Sobic003G217800--Sobic003G018000 Sobic003G217800--Sobic001G485700 Sobic009G220700 Sobic009G220700 Sobic003G217800--Sobic009G220700 Sobic004G062600 Sobic004G062600 Sobic003G217800--Sobic004G062600 Sobic010G263400 Sobic010G263400 Sobic003G217800--Sobic010G263400 Sobic003G009000--Sobic009G098700 Sobic006G239500 Sobic006G239500 Sobic003G009000--Sobic006G239500 Sobic003G009000--Sobic002G199800 Sobic003G009000--Sobic001G183666 Sobic004G349600 Sobic004G349600 Sobic003G009000--Sobic004G349600 Sobic003G009000--Sobic003G407700 Sobic003G009000--Sobic010G073900 Sobic001G257650 Sobic001G257650 Sobic003G009000--Sobic001G257650 Sobic003G009000--Sobic001G485700 Sobic006G077050--Sobic010G073900 Sobic006G077050--Sobic002G199800 Sobic006G077050--Sobic006G239500 Sobic006G077050--Sobic003G407700 Sobic009G238650 Sobic009G238650 Sobic006G077050--Sobic009G238650 Sobic006G077050--Sobic004G349600 Sobic006G077050--Sobic001G183666 Sobic006G077050--Sobic009G098700 Sobic007G048101 Sobic007G048101 Sobic006G077050--Sobic007G048101 Sobic010G062900 Sobic010G062900 Sobic002G309100--Sobic010G062900 Sobic002G309100--Sobic003G009000 Sobic001G010500 Sobic001G010500 Sobic002G309100--Sobic001G010500 Sobic009G163400 Sobic009G163400 Sobic002G309100--Sobic009G163400 Sobic002G309100--Sobic009G098700 Sobic002G309100--Sobic001G485700 Sobic002G309100--Sobic001G257650 Sobic008G121501 Sobic008G121501 Sobic002G309100--Sobic008G121501 Sobic002G309100--Sobic001G130600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.