Gene annotation
Transcriptome id Sobic.002G136500.1
Synonym
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt A0A1W0W3W6
Pfam PF13639
Panther DB PTHR13561 PTHR13561:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G67180 : zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
RAP-DB (Rice) LOC_Os08g31930.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006080 , Zm00025a031029
Brachypodium KQJ98265
Barley HORVU1Hr1G003740.9 , HORVU1Hr1G003740.8 , HORVU1Hr1G003740.1 , HORVU1Hr1G003740.3 , HORVU1Hr1G003740.2 , HORVU1Hr1G003740.5 , HORVU1Hr1G003740.4 , HORVU1Hr1G003740.7 , HORVU1Hr1G003740.6 , HORVU1Hr1G003740.11 , HORVU1Hr1G003740.10 , HORVU1Hr1G003740.12
Wheat TraesCS1D02G026100 , TraesCS1A02G025700 , TraesCS1B02G032600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G216650 - -
2 Sobic.002G075100 receptor kinase, putative, expressed -
3 Sobic.002G287300 proteophosphoglycan ppg4, putative, expressed -
4 Sobic.001G111650 - -
5 Sobic.007G083700 - -
6 Sobic.001G436450 - -
7 Sobic.004G159866 - -
8 Sobic.003G244250 - -
9 Sobic.001G143850 - -
10 Sobic.010G020000 cytochrome P450 86A1, putative, expressed -
11 Sobic.009G053700 gibberellin 2-oxidase, putative, expressed K04125: gibberellin 2beta-dioxygenase
12 Sobic.010G157600 expressed protein -
13 Sobic.003G416200 NADPH-dependent oxidoreductase, putative, expressed -
14 Sobic.001G087850 - -
15 Sobic.006G171801 - -
16 Sobic.001G315300 chloroplast 30S ribosomal protein S2, putative, expressed -
17 Sobic.002G168750 - -
18 Sobic.002G246100 - -
19 Sobic.009G184450 - -
20 Sobic.004G260250 - -


Gene co-expression network
sample Sobic002G136500 Sobic002G136500 Sobic004G216650 Sobic004G216650 Sobic002G136500--Sobic004G216650 Sobic002G075100 Sobic002G075100 Sobic002G136500--Sobic002G075100 Sobic002G287300 Sobic002G287300 Sobic002G136500--Sobic002G287300 Sobic001G111650 Sobic001G111650 Sobic002G136500--Sobic001G111650 Sobic007G083700 Sobic007G083700 Sobic002G136500--Sobic007G083700 Sobic001G436450 Sobic001G436450 Sobic002G136500--Sobic001G436450 Sobic004G159866 Sobic004G159866 Sobic002G136500--Sobic004G159866 Sobic003G244250 Sobic003G244250 Sobic002G136500--Sobic003G244250 Sobic001G143850 Sobic001G143850 Sobic002G136500--Sobic001G143850 Sobic004G216650--Sobic002G136500 Sobic004G216650--Sobic002G075100 Sobic004G216650--Sobic001G143850 Sobic004G216650--Sobic002G287300 Sobic009G053700 Sobic009G053700 Sobic004G216650--Sobic009G053700 Sobic001G315300 Sobic001G315300 Sobic004G216650--Sobic001G315300 Sobic010G020000 Sobic010G020000 Sobic004G216650--Sobic010G020000 Sobic003G416200 Sobic003G416200 Sobic004G216650--Sobic003G416200 Sobic004G216650--Sobic001G111650 Sobic002G075100--Sobic002G136500 Sobic002G075100--Sobic007G083700 Sobic002G075100--Sobic004G216650 Sobic002G075100--Sobic004G159866 Sobic002G075100--Sobic001G111650 Sobic002G168750 Sobic002G168750 Sobic002G075100--Sobic002G168750 Sobic008G167900 Sobic008G167900 Sobic002G075100--Sobic008G167900 Sobic002G075100--Sobic001G436450 Sobic001G087850 Sobic001G087850 Sobic002G075100--Sobic001G087850 Sobic002G287300--Sobic004G216650 Sobic002G287300--Sobic002G136500 Sobic002G287300--Sobic002G075100 Sobic002G287300--Sobic001G143850 Sobic002G287300--Sobic010G020000 Sobic002G287300--Sobic001G315300 Sobic002G287300--Sobic003G416200 Sobic002G287300--Sobic009G053700 Sobic002G287300--Sobic003G244250 Sobic001G111650--Sobic002G075100 Sobic001G111650--Sobic007G083700 Sobic001G111650--Sobic002G136500 Sobic001G111650--Sobic004G159866 Sobic001G111650--Sobic004G216650 Sobic001G111650--Sobic002G168750 Sobic004G260250 Sobic004G260250 Sobic001G111650--Sobic004G260250 Sobic002G163400 Sobic002G163400 Sobic001G111650--Sobic002G163400 Sobic003G263450 Sobic003G263450 Sobic001G111650--Sobic003G263450 Sobic007G083700--Sobic002G168750 Sobic007G083700--Sobic004G159866 Sobic002G168700 Sobic002G168700 Sobic007G083700--Sobic002G168700 Sobic007G083700--Sobic002G075100 Sobic006G233900 Sobic006G233900 Sobic007G083700--Sobic006G233900 Sobic007G013700 Sobic007G013700 Sobic007G083700--Sobic007G013700 Sobic001G072100 Sobic001G072100 Sobic007G083700--Sobic001G072100 Sobic002G149500 Sobic002G149500 Sobic007G083700--Sobic002G149500 Sobic007G083700--Sobic010G020000 Sobic003G404050 Sobic003G404050 Sobic001G436450--Sobic003G404050 Sobic001G249800 Sobic001G249800 Sobic001G436450--Sobic001G249800 Sobic001G436450--Sobic001G087850 Sobic010G011100 Sobic010G011100 Sobic001G436450--Sobic010G011100 Sobic001G436450--Sobic003G244250 Sobic006G176900 Sobic006G176900 Sobic001G436450--Sobic006G176900 Sobic004G207733 Sobic004G207733 Sobic001G436450--Sobic004G207733 Sobic004G187701 Sobic004G187701 Sobic001G436450--Sobic004G187701 Sobic010G123650 Sobic010G123650 Sobic001G436450--Sobic010G123650 Sobic004G159866--Sobic007G083700 Sobic004G159866--Sobic002G168750 Sobic004G159866--Sobic003G263450 Sobic004G159866--Sobic002G075100 Sobic002G018200 Sobic002G018200 Sobic004G159866--Sobic002G018200 Sobic004G159866--Sobic002G168700 Sobic004G072600 Sobic004G072600 Sobic004G159866--Sobic004G072600 Sobic002G149600 Sobic002G149600 Sobic004G159866--Sobic002G149600 Sobic009G178650 Sobic009G178650 Sobic004G159866--Sobic009G178650 Sobic002G246100 Sobic002G246100 Sobic003G244250--Sobic002G246100 Sobic003G244250--Sobic001G436450 Sobic003G244250--Sobic004G260250 Sobic009G079400 Sobic009G079400 Sobic003G244250--Sobic009G079400 Sobic003G244250--Sobic004G187701 Sobic002G147550 Sobic002G147550 Sobic003G244250--Sobic002G147550 Sobic003G244250--Sobic006G176900 Sobic003G244250--Sobic003G416200 Sobic003G244250--Sobic004G207733 Sobic010G172633 Sobic010G172633 Sobic001G143850--Sobic010G172633 Sobic001G143850--Sobic004G216650 Sobic001G143850--Sobic001G315300 Sobic001G143850--Sobic009G053700 Sobic010G246800 Sobic010G246800 Sobic001G143850--Sobic010G246800 Sobic001G143850--Sobic003G416200 Sobic003G394150 Sobic003G394150 Sobic001G143850--Sobic003G394150 Sobic001G143850--Sobic010G020000 Sobic001G143850--Sobic002G136500
Octagon: transcription factors


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