Gene annotation
Transcriptome id Sobic.001G315300.1
Synonym
Functional annotation chloroplast 30S ribosomal protein S2, putative, expressed
UniProt A0A1B6QM73
Pfam PF00318
Panther DB PTHR12534
NCBI CDD KOG0832; Mitochondrial/chloroplast ribosomal protein S2
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0015935small ribosomal subunit


Orthologs (automatic annotation)
TAIR ATCG00160 : ribosomal protein S2
RAP-DB (Rice) LOC_Os10g38278.1 : chloroplast 30S ribosomal protein S2, putative, expressed
MaizeGDB (Corn) Zm00025a044831 , Zm00025a057591 , Zm00025a057882 , Zm00025a057941 , Zm00025a054973 , Zm00025a057704 , Zm00025a057620 , Zm00025a041313 , Zm00025a018304 , Zm00025a058076 , Zm00025a058031 , Zm00025a057677
Brachypodium KQK12760 , KQK18167 , KQJ84934
Barley HORVU6Hr1G040880.1 , HORVU6Hr1G040880.2 , HORVU4Hr1G045360.1 , HORVU0Hr1G028540.1 , AGP50748 , HORVU6Hr1G049140.1 , HORVU0Hr1G032730.1
Wheat TraesCS4D02G042600 , TraesCS1D02G169400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G172633 - -
2 Sobic.002G109900 glycosyl hydrolase, putative, expressed K01183: chitinase
3 Sobic.001G143850 - -
4 Sobic.004G216650 - -
5 Sobic.003G147800 expressed protein -
6 Sobic.001G184950 - -
7 Sobic.002G136500 BRCA1 C Terminus domain containing protein, expressed -
8 Sobic.001G074900 lectin-like receptor kinase, putative, expressed -
9 Sobic.002G286500 carrier, putative, expressed -
10 Sobic.002G287300 proteophosphoglycan ppg4, putative, expressed -
11 Sobic.001G035700 - -
12 Sobic.003G023901 - -
13 Sobic.004G039800 cyclin-related protein, putative, expressed -
14 Sobic.004G282966 - -
15 Sobic.010G157600 expressed protein -
16 Sobic.006G171801 - -
17 Sobic.001G248900 exocyst complex component 6, putative, expressed -
18 Sobic.001G060800 cell division control protein 2 homolog 3, putative, expressed K08818: cell division cycle 2-like
19 Sobic.009G258000 S-locus lectin protein kinase family protein, putative, expressed -
20 Sobic.001G526050 - -


Gene co-expression network
sample Sobic001G315300 Sobic001G315300 Sobic010G172633 Sobic010G172633 Sobic001G315300--Sobic010G172633 Sobic002G109900 Sobic002G109900 Sobic001G315300--Sobic002G109900 Sobic001G143850 Sobic001G143850 Sobic001G315300--Sobic001G143850 Sobic004G216650 Sobic004G216650 Sobic001G315300--Sobic004G216650 Sobic003G147800 Sobic003G147800 Sobic001G315300--Sobic003G147800 Sobic001G184950 Sobic001G184950 Sobic001G315300--Sobic001G184950 Sobic002G136500 Sobic002G136500 Sobic001G315300--Sobic002G136500 Sobic001G074900 Sobic001G074900 Sobic001G315300--Sobic001G074900 Sobic002G286500 Sobic002G286500 Sobic001G315300--Sobic002G286500 Sobic010G172633--Sobic001G315300 Sobic010G172633--Sobic001G143850 Sobic001G035700 Sobic001G035700 Sobic010G172633--Sobic001G035700 Sobic001G505066 Sobic001G505066 Sobic010G172633--Sobic001G505066 Sobic010G172633--Sobic001G184950 Sobic009G147450 Sobic009G147450 Sobic010G172633--Sobic009G147450 Sobic010G172633--Sobic003G147800 Sobic003G132200 Sobic003G132200 Sobic010G172633--Sobic003G132200 Sobic010G172633--Sobic002G109900 Sobic002G109900--Sobic001G315300 Sobic003G023901 Sobic003G023901 Sobic002G109900--Sobic003G023901 Sobic002G109900--Sobic002G286500 Sobic007G223801 Sobic007G223801 Sobic002G109900--Sobic007G223801 Sobic010G157600 Sobic010G157600 Sobic002G109900--Sobic010G157600 Sobic002G109900--Sobic001G074900 Sobic004G039800 Sobic004G039800 Sobic002G109900--Sobic004G039800 Sobic002G109900--Sobic001G184950 Sobic009G258000 Sobic009G258000 Sobic002G109900--Sobic009G258000 Sobic001G143850--Sobic010G172633 Sobic001G143850--Sobic004G216650 Sobic001G143850--Sobic001G315300 Sobic009G053700 Sobic009G053700 Sobic001G143850--Sobic009G053700 Sobic010G246800 Sobic010G246800 Sobic001G143850--Sobic010G246800 Sobic003G416200 Sobic003G416200 Sobic001G143850--Sobic003G416200 Sobic003G394150 Sobic003G394150 Sobic001G143850--Sobic003G394150 Sobic010G020000 Sobic010G020000 Sobic001G143850--Sobic010G020000 Sobic001G143850--Sobic002G136500 Sobic004G216650--Sobic002G136500 Sobic002G075100 Sobic002G075100 Sobic004G216650--Sobic002G075100 Sobic004G216650--Sobic001G143850 Sobic002G287300 Sobic002G287300 Sobic004G216650--Sobic002G287300 Sobic004G216650--Sobic009G053700 Sobic004G216650--Sobic001G315300 Sobic004G216650--Sobic010G020000 Sobic004G216650--Sobic003G416200 Sobic001G111650 Sobic001G111650 Sobic004G216650--Sobic001G111650 Sobic004G282966 Sobic004G282966 Sobic003G147800--Sobic004G282966 Sobic003G147800--Sobic003G416200 Sobic003G244250 Sobic003G244250 Sobic003G147800--Sobic003G244250 Sobic003G147800--Sobic001G074900 Sobic002G246100 Sobic002G246100 Sobic003G147800--Sobic002G246100 Sobic003G147800--Sobic001G315300 Sobic001G016050 Sobic001G016050 Sobic003G147800--Sobic001G016050 Sobic003G147800--Sobic001G143850 Sobic002G157050 Sobic002G157050 Sobic003G147800--Sobic002G157050 Sobic001G184950--Sobic010G172633 Sobic001G184950--Sobic001G315300 Sobic001G184950--Sobic001G035700 Sobic001G184950--Sobic002G109900 Sobic003G081200 Sobic003G081200 Sobic001G184950--Sobic003G081200 Sobic001G060800 Sobic001G060800 Sobic001G184950--Sobic001G060800 Sobic001G184950--Sobic001G143850 Sobic001G184950--Sobic004G039800 Sobic001G184950--Sobic009G147450 Sobic002G136500--Sobic004G216650 Sobic002G136500--Sobic002G075100 Sobic002G136500--Sobic002G287300 Sobic002G136500--Sobic001G111650 Sobic007G083700 Sobic007G083700 Sobic002G136500--Sobic007G083700 Sobic001G436450 Sobic001G436450 Sobic002G136500--Sobic001G436450 Sobic004G159866 Sobic004G159866 Sobic002G136500--Sobic004G159866 Sobic002G136500--Sobic003G244250 Sobic002G136500--Sobic001G143850 Sobic001G074900--Sobic002G286500 Sobic001G074900--Sobic003G147800 Sobic001G074900--Sobic002G109900 Sobic010G226100 Sobic010G226100 Sobic001G074900--Sobic010G226100 Sobic001G074900--Sobic001G315300 Sobic010G028366 Sobic010G028366 Sobic001G074900--Sobic010G028366 Sobic006G171801 Sobic006G171801 Sobic001G074900--Sobic006G171801 Sobic001G074900--Sobic002G246100 Sobic001G074900--Sobic004G282966 Sobic002G286500--Sobic006G171801 Sobic002G286500--Sobic001G074900 Sobic002G286500--Sobic002G109900 Sobic002G286500--Sobic007G223801 Sobic002G286500--Sobic010G157600 Sobic001G248900 Sobic001G248900 Sobic002G286500--Sobic001G248900 Sobic002G286500--Sobic001G315300 Sobic002G286500--Sobic010G028366 Sobic002G286500--Sobic003G023901
Octagon: transcription factors


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