Gene annotation
Transcriptome id Sobic.003G076200.5,Sobic.003G076200.1,Sobic.003G076200.2,Sobic.003G076200.4
Synonym ATPTR1, Sb03g006420, PTR1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptide transporter PTR2, putative, expressed
UniProt A0A1B6Q1W5
Pfam PF07690
Panther DB PTHR11654 PTHR11654:SF125
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G54140 : peptide transporter 1
RAP-DB (Rice) LOC_Os01g04950.3,LOC_Os01g04950.1,LOC_Os01g04950.2 : peptide transporter PTR2, putative, expressed
MaizeGDB (Corn) Zm00025a035605 , Zm00025a003670 , Zm00025a023849 , Zm00025a026389
Brachypodium KQK02639 , KQK10821 , KQK11069 , KQK06833 , PNT77238 , KQJ84356 , KQK02641 , KQK02640 , KQK02642
Barley HORVU2Hr1G098120.1 , HORVU4Hr1G064820.2 , HORVU4Hr1G064820.3 , HORVU4Hr1G064820.1 , HORVU4Hr1G088890.1 , HORVU4Hr1G088890.2 , HORVU3Hr1G010830.1 , HORVU3Hr1G010830.2 , HORVU4Hr1G086920.1 , HORVU2Hr1G033660.2 , HORVU2Hr1G033660.1 , HORVU2Hr1G102720.1 , HORVU3Hr1G082360.6 , HORVU3Hr1G082360.7 , HORVU3Hr1G082360.4 , HORVU3Hr1G082360.5 , HORVU3Hr1G082360.2 , HORVU3Hr1G082360.3 , HORVU3Hr1G082360.8 , HORVU3Hr1G071510.3 , HORVU3Hr1G071510.2 , HORVU3Hr1G071510.1 , HORVU3Hr1G088850.11 , HORVU3Hr1G088850.12 , HORVU3Hr1G088850.13 , HORVU3Hr1G014510.2 , HORVU3Hr1G014510.3 , HORVU3Hr1G014510.1 , HORVU3Hr1G010570.8 , HORVU3Hr1G010570.4 , HORVU3Hr1G010570.5 , HORVU3Hr1G010570.6 , HORVU3Hr1G010570.7 , HORVU3Hr1G010570.1 , HORVU3Hr1G010570.2 , HORVU3Hr1G010570.3 , HORVU3Hr1G088850.8 , HORVU3Hr1G088850.9 , HORVU3Hr1G088850.6 , HORVU3Hr1G088850.3
Wheat TraesCS3A02G081100 , TraesCS3D02G057000 , TraesCS3A02G056400 , TraesCS2D02G442700 , TraesCS3D02G056700 , TraesCS3D02G385600 , TraesCS3B02G069100 , TraesCS3A02G057000 , TraesCS4D02G233100 , TraesCS4B02G231800 , TraesCS2A02G443600 , TraesCS3D02G375200 , TraesCS3D02G056300 , TraesCS3A02G382900 , TraesCS2A02G416800 , TraesCS2D02G413900 , TraesCS5B02G245300 , TraesCS2B02G464700 , TraesCS3A02G272600 , TraesCS3D02G385700 , TraesCS4A02G076000 , TraesCS3B02G069900 , TraesCS3B02G070200
Populus -


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cDNA sequences
Sobic.003G076200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
2 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
3 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
5 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
6 Sobic.002G276400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
7 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
8 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
9 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
10 Sobic.003G087100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
12 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
13 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
14 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
15 Sobic.003G263100 Protein kinase domain containing protein, expressed -
16 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
17 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
18 Sobic.001G476400 - -
19 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
20 Sobic.006G263100 expressed protein -


Gene co-expression network
sample Sobic003G076200 Sobic003G076200 Sobic004G280800 Sobic004G280800 Sobic003G076200--Sobic004G280800 Sobic007G178200 Sobic007G178200 Sobic003G076200--Sobic007G178200 Sobic001G081600 Sobic001G081600 Sobic003G076200--Sobic001G081600 Sobic004G273200 Sobic004G273200 Sobic003G076200--Sobic004G273200 Sobic004G025000 Sobic004G025000 Sobic003G076200--Sobic004G025000 Sobic002G276400 Sobic002G276400 Sobic003G076200--Sobic002G276400 Sobic004G031600 Sobic004G031600 Sobic003G076200--Sobic004G031600 Sobic002G395600 Sobic002G395600 Sobic003G076200--Sobic002G395600 Sobic002G330300 Sobic002G330300 Sobic003G076200--Sobic002G330300 Sobic010G228000 Sobic010G228000 Sobic004G280800--Sobic010G228000 Sobic006G263100 Sobic006G263100 Sobic004G280800--Sobic006G263100 Sobic002G118600 Sobic002G118600 Sobic004G280800--Sobic002G118600 Sobic001G290400 Sobic001G290400 Sobic004G280800--Sobic001G290400 Sobic003G338900 Sobic003G338900 Sobic004G280800--Sobic003G338900 Sobic004G280800--Sobic004G025000 Sobic007G011000 Sobic007G011000 Sobic004G280800--Sobic007G011000 Sobic004G053200 Sobic004G053200 Sobic004G280800--Sobic004G053200 Sobic001G189700 Sobic001G189700 Sobic004G280800--Sobic001G189700 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic007G178200--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic004G281200 Sobic004G281200 Sobic001G081600--Sobic004G281200 Sobic002G344700 Sobic002G344700 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G081600--Sobic001G476400 Sobic004G273200--Sobic002G197600 Sobic002G270700 Sobic002G270700 Sobic004G273200--Sobic002G270700 Sobic009G159900 Sobic009G159900 Sobic004G273200--Sobic009G159900 Sobic004G273200--Sobic001G081600 Sobic004G273200--Sobic004G281200 Sobic004G273200--Sobic004G025000 Sobic004G273200--Sobic002G344700 Sobic004G273200--Sobic001G476400 Sobic004G273200--Sobic003G338900 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic004G025000--Sobic002G344700 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic002G276400--Sobic001G081600 Sobic002G203000 Sobic002G203000 Sobic002G276400--Sobic002G203000 Sobic002G276400--Sobic002G197600 Sobic009G170100 Sobic009G170100 Sobic002G276400--Sobic009G170100 Sobic001G473900 Sobic001G473900 Sobic002G276400--Sobic001G473900 Sobic002G276400--Sobic002G330300 Sobic002G276400--Sobic010G076700 Sobic002G276400--Sobic001G476400 Sobic009G071800 Sobic009G071800 Sobic002G276400--Sobic009G071800 Sobic001G516100 Sobic001G516100 Sobic004G031600--Sobic001G516100 Sobic010G052800 Sobic010G052800 Sobic004G031600--Sobic010G052800 Sobic004G031600--Sobic002G330300 Sobic009G231200 Sobic009G231200 Sobic004G031600--Sobic009G231200 Sobic003G407200 Sobic003G407200 Sobic004G031600--Sobic003G407200 Sobic001G031600 Sobic001G031600 Sobic004G031600--Sobic001G031600 Sobic003G119800 Sobic003G119800 Sobic004G031600--Sobic003G119800 Sobic007G169200 Sobic007G169200 Sobic004G031600--Sobic007G169200 Sobic001G463000 Sobic001G463000 Sobic004G031600--Sobic001G463000 Sobic002G395600--Sobic006G263100 Sobic002G395600--Sobic003G392200 Sobic001G214200 Sobic001G214200 Sobic002G395600--Sobic001G214200 Sobic002G395600--Sobic002G330300 Sobic002G395600--Sobic007G178200 Sobic010G017000 Sobic010G017000 Sobic002G395600--Sobic010G017000 Sobic004G026200 Sobic004G026200 Sobic002G395600--Sobic004G026200 Sobic002G395600--Sobic004G280800 Sobic001G283500 Sobic001G283500 Sobic002G395600--Sobic001G283500 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic002G330300--Sobic010G052800 Sobic002G330300--Sobic010G228000 Sobic002G330300--Sobic007G011000 Sobic002G330300--Sobic004G025000 Sobic002G330300--Sobic002G118600 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100
Octagon: transcription factors


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