Gene annotation
Transcriptome id Sobic.003G263100.1
Synonym
Functional annotation Protein kinase domain containing protein, expressed
UniProt A0A1W0VZ00
Pfam PF13947 PF14380
Panther DB PTHR33138 PTHR33138:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18390 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os01g49614.1 : Protein kinase domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G263100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
2 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.002G344700 remorin, putative, expressed -
4 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
5 Sobic.003G225900 expressed protein -
6 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
7 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
8 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
9 Sobic.004G283300 AP2 domain containing protein, expressed -
10 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
11 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
12 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
13 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
14 Sobic.003G291600 receptor-like protein kinase 5 precursor, putative, expressed -
15 Sobic.003G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
16 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
17 Sobic.001G095750 - -
18 Sobic.008G044750 - -
19 Sobic.010G272101 - -
20 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -


Gene co-expression network
sample Sobic003G263100 Sobic003G263100 Sobic001G314700 Sobic001G314700 Sobic003G263100--Sobic001G314700 Sobic004G025000 Sobic004G025000 Sobic003G263100--Sobic004G025000 Sobic002G344700 Sobic002G344700 Sobic003G263100--Sobic002G344700 Sobic001G081600 Sobic001G081600 Sobic003G263100--Sobic001G081600 Sobic003G225900 Sobic003G225900 Sobic003G263100--Sobic003G225900 Sobic005G087800 Sobic005G087800 Sobic003G263100--Sobic005G087800 Sobic002G189000 Sobic002G189000 Sobic003G263100--Sobic002G189000 Sobic001G462800 Sobic001G462800 Sobic003G263100--Sobic001G462800 Sobic004G283300 Sobic004G283300 Sobic003G263100--Sobic004G283300 Sobic007G145700 Sobic007G145700 Sobic001G314700--Sobic007G145700 Sobic001G314700--Sobic004G025000 Sobic001G314700--Sobic001G081600 Sobic006G146500 Sobic006G146500 Sobic001G314700--Sobic006G146500 Sobic001G314700--Sobic001G462800 Sobic003G341100 Sobic003G341100 Sobic001G314700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic001G314700--Sobic002G294600 Sobic003G352400 Sobic003G352400 Sobic001G314700--Sobic003G352400 Sobic002G118600 Sobic002G118600 Sobic001G314700--Sobic002G118600 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic001G476400 Sobic001G476400 Sobic004G025000--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic004G025000--Sobic001G063600 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic002G344700--Sobic001G462800 Sobic006G032200 Sobic006G032200 Sobic002G344700--Sobic006G032200 Sobic002G344700--Sobic004G025000 Sobic009G170100 Sobic009G170100 Sobic002G344700--Sobic009G170100 Sobic004G281200 Sobic004G281200 Sobic002G344700--Sobic004G281200 Sobic006G210300 Sobic006G210300 Sobic002G344700--Sobic006G210300 Sobic002G217100 Sobic002G217100 Sobic002G344700--Sobic002G217100 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic006G267900 Sobic006G267900 Sobic003G225900--Sobic006G267900 Sobic003G225900--Sobic002G189000 Sobic002G271100 Sobic002G271100 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G373150 Sobic003G373150 Sobic003G225900--Sobic003G373150 Sobic003G225900--Sobic001G081600 Sobic010G260300 Sobic010G260300 Sobic003G225900--Sobic010G260300 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic003G233900 Sobic003G233900 Sobic005G087800--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic005G087800--Sobic004G285100 Sobic002G182800 Sobic002G182800 Sobic005G087800--Sobic002G182800 Sobic005G087800--Sobic002G189000 Sobic005G087800--Sobic004G283300 Sobic004G310600 Sobic004G310600 Sobic005G087800--Sobic004G310600 Sobic003G227600 Sobic003G227600 Sobic005G087800--Sobic003G227600 Sobic009G128300 Sobic009G128300 Sobic005G087800--Sobic009G128300 Sobic009G000700 Sobic009G000700 Sobic005G087800--Sobic009G000700 Sobic002G013900 Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic002G189000--Sobic003G233900 Sobic002G189000--Sobic002G271100 Sobic002G189000--Sobic010G260300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic002G189000--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic002G189000--Sobic004G155150 Sobic002G189000--Sobic004G285100 Sobic001G462800--Sobic001G081600 Sobic001G462800--Sobic002G217100 Sobic001G462800--Sobic002G294600 Sobic001G462800--Sobic002G197600 Sobic001G462800--Sobic002G344700 Sobic002G367900 Sobic002G367900 Sobic001G462800--Sobic002G367900 Sobic001G462800--Sobic006G210300 Sobic001G462800--Sobic007G145700 Sobic001G462800--Sobic004G281200 Sobic004G283300--Sobic002G344700 Sobic010G016500 Sobic010G016500 Sobic004G283300--Sobic010G016500 Sobic004G283300--Sobic001G081600 Sobic004G283300--Sobic004G283201 Sobic004G283300--Sobic009G170100 Sobic004G283300--Sobic006G032200 Sobic004G283300--Sobic004G281200 Sobic004G283300--Sobic001G476400 Sobic004G283300--Sobic006G210300
Octagon: transcription factors


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