Gene annotation
Transcriptome id Sobic.003G223100.1
Synonym Sb03g028140
Functional annotation polygalacturonase, putative, expressed
UniProt C5XR39
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23820 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g43160.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a038552 , Zm00025a014301
Brachypodium KQK08762
Barley HORVU3Hr1G054810.2 , HORVU3Hr1G054810.1 , HORVU3Hr1G054810.6 , HORVU3Hr1G054810.5 , HORVU3Hr1G054810.4
Wheat TraesCS3D02G230000
Populus PNT45340 , PNT53696


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
2 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.001G047200 carboxyl-terminal peptidase, putative, expressed -
4 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
5 Sobic.008G181400 Fatty acid hydroxylase 1 FAH1 (Os)(PubMedID : 27208977)@fatty acid hydroxylase, putative, expressed -
6 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
7 Sobic.003G291000 protein kinase family protein, putative, expressed -
8 Sobic.003G030700 ectonucleotide pyrophosphatase/phosphodiesterase family member 1, putative, expressed -
9 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
10 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
11 Sobic.010G055400 OsWAK63 - OsWAK receptor-like protein kinase, expressed -
12 Sobic.008G143600 expressed protein -
13 Sobic.006G157800 glycosyl transferase 8 domain containing protein, putative, expressed -
14 Sobic.002G370400 expressed protein -
15 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
16 Sobic.002G396200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
17 Sobic.001G113800 receptor protein kinase TMK1 precursor, putative, expressed -
18 Sobic.001G069700 fatty acid hydroxylase, putative, expressed -
19 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.010G211700 - -


Gene co-expression network
sample Sobic003G223100 Sobic003G223100 Sobic008G075200 Sobic008G075200 Sobic003G223100--Sobic008G075200 Sobic002G377300 Sobic002G377300 Sobic003G223100--Sobic002G377300 Sobic001G047200 Sobic001G047200 Sobic003G223100--Sobic001G047200 Sobic009G055900 Sobic009G055900 Sobic003G223100--Sobic009G055900 Sobic008G181400 Sobic008G181400 Sobic003G223100--Sobic008G181400 Sobic004G319800 Sobic004G319800 Sobic003G223100--Sobic004G319800 Sobic003G291000 Sobic003G291000 Sobic003G223100--Sobic003G291000 Sobic003G030700 Sobic003G030700 Sobic003G223100--Sobic003G030700 Sobic003G148400 Sobic003G148400 Sobic003G223100--Sobic003G148400 Sobic008G075200--Sobic004G319800 Sobic004G047400 Sobic004G047400 Sobic008G075200--Sobic004G047400 Sobic002G317600 Sobic002G317600 Sobic008G075200--Sobic002G317600 Sobic008G075200--Sobic008G181400 Sobic008G075200--Sobic003G223100 Sobic009G151100 Sobic009G151100 Sobic008G075200--Sobic009G151100 Sobic009G231100 Sobic009G231100 Sobic008G075200--Sobic009G231100 Sobic009G002900 Sobic009G002900 Sobic008G075200--Sobic009G002900 Sobic004G253500 Sobic004G253500 Sobic008G075200--Sobic004G253500 Sobic002G377300--Sobic009G055900 Sobic001G371700 Sobic001G371700 Sobic002G377300--Sobic001G371700 Sobic010G165100 Sobic010G165100 Sobic002G377300--Sobic010G165100 Sobic002G142500 Sobic002G142500 Sobic002G377300--Sobic002G142500 Sobic002G377300--Sobic009G231100 Sobic002G377300--Sobic001G047200 Sobic008G143600 Sobic008G143600 Sobic002G377300--Sobic008G143600 Sobic002G225000 Sobic002G225000 Sobic002G377300--Sobic002G225000 Sobic002G246000 Sobic002G246000 Sobic002G377300--Sobic002G246000 Sobic002G311000 Sobic002G311000 Sobic001G047200--Sobic002G311000 Sobic001G047200--Sobic002G142500 Sobic010G135300 Sobic010G135300 Sobic001G047200--Sobic010G135300 Sobic001G047200--Sobic002G377300 Sobic003G096300 Sobic003G096300 Sobic001G047200--Sobic003G096300 Sobic001G482300 Sobic001G482300 Sobic001G047200--Sobic001G482300 Sobic003G420800 Sobic003G420800 Sobic001G047200--Sobic003G420800 Sobic001G157100 Sobic001G157100 Sobic001G047200--Sobic001G157100 Sobic009G148200 Sobic009G148200 Sobic001G047200--Sobic009G148200 Sobic009G055900--Sobic008G143600 Sobic009G055900--Sobic002G377300 Sobic001G405000 Sobic001G405000 Sobic009G055900--Sobic001G405000 Sobic004G109000 Sobic004G109000 Sobic009G055900--Sobic004G109000 Sobic009G059100 Sobic009G059100 Sobic009G055900--Sobic009G059100 Sobic006G001400 Sobic006G001400 Sobic009G055900--Sobic006G001400 Sobic006G060500 Sobic006G060500 Sobic009G055900--Sobic006G060500 Sobic004G243400 Sobic004G243400 Sobic009G055900--Sobic004G243400 Sobic001G389600 Sobic001G389600 Sobic009G055900--Sobic001G389600 Sobic008G181400--Sobic004G319800 Sobic008G181400--Sobic008G075200 Sobic008G181400--Sobic009G002900 Sobic008G066700 Sobic008G066700 Sobic008G181400--Sobic008G066700 Sobic008G181400--Sobic002G317600 Sobic008G181400--Sobic009G055900 Sobic008G181400--Sobic003G223100 Sobic003G261200 Sobic003G261200 Sobic008G181400--Sobic003G261200 Sobic008G181400--Sobic008G143600 Sobic004G319800--Sobic008G181400 Sobic004G319800--Sobic008G075200 Sobic007G166600 Sobic007G166600 Sobic004G319800--Sobic007G166600 Sobic004G319800--Sobic009G002900 Sobic001G379100 Sobic001G379100 Sobic004G319800--Sobic001G379100 Sobic004G319800--Sobic002G317600 Sobic006G084500 Sobic006G084500 Sobic004G319800--Sobic006G084500 Sobic007G026200 Sobic007G026200 Sobic004G319800--Sobic007G026200 Sobic003G333700 Sobic003G333700 Sobic004G319800--Sobic003G333700 Sobic006G241800 Sobic006G241800 Sobic003G291000--Sobic006G241800 Sobic003G291000--Sobic002G311000 Sobic001G461800 Sobic001G461800 Sobic003G291000--Sobic001G461800 Sobic001G074100 Sobic001G074100 Sobic003G291000--Sobic001G074100 Sobic002G045200 Sobic002G045200 Sobic003G291000--Sobic002G045200 Sobic003G078300 Sobic003G078300 Sobic003G291000--Sobic003G078300 Sobic010G211800 Sobic010G211800 Sobic003G291000--Sobic010G211800 Sobic002G164700 Sobic002G164700 Sobic003G291000--Sobic002G164700 Sobic003G250000 Sobic003G250000 Sobic003G291000--Sobic003G250000 Sobic009G124800 Sobic009G124800 Sobic003G030700--Sobic009G124800 Sobic003G030700--Sobic001G074100 Sobic009G134000 Sobic009G134000 Sobic003G030700--Sobic009G134000 Sobic003G030700--Sobic002G142500 Sobic001G113800 Sobic001G113800 Sobic003G030700--Sobic001G113800 Sobic003G030700--Sobic003G291000 Sobic003G030700--Sobic001G047200 Sobic009G154100 Sobic009G154100 Sobic003G030700--Sobic009G154100 Sobic002G001100 Sobic002G001100 Sobic003G030700--Sobic002G001100 Sobic003G148400--Sobic001G379100 Sobic003G148400--Sobic003G250000 Sobic003G148400--Sobic004G253500 Sobic001G164500 Sobic001G164500 Sobic003G148400--Sobic001G164500 Sobic010G096200 Sobic010G096200 Sobic003G148400--Sobic010G096200 Sobic003G148400--Sobic002G225000 Sobic003G259500 Sobic003G259500 Sobic003G148400--Sobic003G259500 Sobic003G148400--Sobic009G002900 Sobic003G148400--Sobic008G075200
Octagon: transcription factors


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