Gene annotation
Transcriptome id Sobic.003G245300.4,Sobic.003G245300.3,Sobic.003G245300.2
Synonym Sb03g030160
Functional annotation 3-5 exonuclease domain-containing protein, putative, expressed
UniProt C5XFV9
Pfam PF01612
Panther DB PTHR13620 PTHR13620:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G12410 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os01g47180.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G122600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
2 Sobic.002G194201 - -
3 Sobic.007G134501 - -
4 Sobic.005G040100 expressed protein -
5 Sobic.003G007650 - -
6 Sobic.005G006100 hypothetical protein -
7 Sobic.007G035200 - -
8 Sobic.005G006400 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
9 Sobic.008G086500 - -
10 Sobic.005G148000 - -
11 Sobic.010G240300 Os12bglu38 - beta-glucosidase/beta-mannosidase/exoglucanase homologue, expressed K05350: beta-glucosidase
12 Sobic.001G192300 expressed protein -
13 Sobic.001G143700 cupin domain containing protein, expressed -
14 Sobic.010G216100 leaf senescence related protein, putative, expressed -
15 Sobic.006G042600 - -
16 Sobic.002G006200 - -
17 Sobic.007G014000 OsFBX142 - F-box domain containing protein, expressed -
18 Sobic.009G110700 OsFBL58 - F-box domain and LRR containing protein, expressed -
19 Sobic.010G090200 OsMADS63 - MADS-box family gene with MIKC , type-box, expressed -
20 Sobic.008G024200 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11


Gene co-expression network
sample Sobic003G245300 Sobic003G245300 Sobic007G122600 Sobic007G122600 Sobic003G245300--Sobic007G122600 Sobic002G194201 Sobic002G194201 Sobic003G245300--Sobic002G194201 Sobic007G134501 Sobic007G134501 Sobic003G245300--Sobic007G134501 Sobic005G040100 Sobic005G040100 Sobic003G245300--Sobic005G040100 Sobic003G007650 Sobic003G007650 Sobic003G245300--Sobic003G007650 Sobic005G006100 Sobic005G006100 Sobic003G245300--Sobic005G006100 Sobic007G035200 Sobic007G035200 Sobic003G245300--Sobic007G035200 Sobic005G006400 Sobic005G006400 Sobic003G245300--Sobic005G006400 Sobic008G086500 Sobic008G086500 Sobic003G245300--Sobic008G086500 Sobic007G122600--Sobic005G006100 Sobic007G122600--Sobic002G194201 Sobic007G122600--Sobic007G134501 Sobic007G122600--Sobic005G040100 Sobic007G122600--Sobic003G007650 Sobic007G122600--Sobic003G245300 Sobic007G122600--Sobic005G006400 Sobic010G240300 Sobic010G240300 Sobic007G122600--Sobic010G240300 Sobic007G122600--Sobic007G035200 Sobic002G194201--Sobic007G134501 Sobic002G194201--Sobic003G007650 Sobic002G194201--Sobic005G006400 Sobic002G194201--Sobic007G035200 Sobic002G194201--Sobic007G122600 Sobic002G194201--Sobic005G040100 Sobic002G194201--Sobic008G086500 Sobic002G194201--Sobic005G006100 Sobic002G194201--Sobic010G240300 Sobic007G134501--Sobic003G007650 Sobic007G134501--Sobic002G194201 Sobic007G134501--Sobic005G040100 Sobic007G134501--Sobic007G035200 Sobic007G134501--Sobic005G006400 Sobic007G134501--Sobic007G122600 Sobic007G134501--Sobic005G006100 Sobic007G134501--Sobic008G086500 Sobic007G134501--Sobic010G240300 Sobic005G148000 Sobic005G148000 Sobic005G040100--Sobic005G148000 Sobic005G040100--Sobic007G134501 Sobic005G040100--Sobic002G194201 Sobic005G040100--Sobic007G122600 Sobic001G143700 Sobic001G143700 Sobic005G040100--Sobic001G143700 Sobic005G040100--Sobic003G007650 Sobic005G040100--Sobic005G006100 Sobic002G006200 Sobic002G006200 Sobic005G040100--Sobic002G006200 Sobic005G040100--Sobic003G245300 Sobic003G007650--Sobic007G035200 Sobic003G007650--Sobic007G134501 Sobic003G007650--Sobic005G006400 Sobic003G007650--Sobic002G194201 Sobic003G007650--Sobic008G086500 Sobic003G007650--Sobic010G240300 Sobic003G007650--Sobic005G006100 Sobic003G007650--Sobic005G040100 Sobic003G007650--Sobic007G122600 Sobic005G006100--Sobic007G122600 Sobic005G006100--Sobic007G134501 Sobic005G006100--Sobic002G194201 Sobic005G006100--Sobic003G007650 Sobic005G006100--Sobic010G240300 Sobic005G006100--Sobic005G006400 Sobic005G006100--Sobic007G035200 Sobic005G006100--Sobic005G040100 Sobic010G207800 Sobic010G207800 Sobic005G006100--Sobic010G207800 Sobic007G035200--Sobic005G006400 Sobic007G035200--Sobic003G007650 Sobic007G035200--Sobic008G086500 Sobic007G035200--Sobic010G240300 Sobic007G035200--Sobic007G134501 Sobic007G035200--Sobic002G194201 Sobic007G035200--Sobic005G006100 Sobic007G014000 Sobic007G014000 Sobic007G035200--Sobic007G014000 Sobic010G216100 Sobic010G216100 Sobic007G035200--Sobic010G216100 Sobic005G006400--Sobic007G035200 Sobic005G006400--Sobic003G007650 Sobic005G006400--Sobic010G240300 Sobic005G006400--Sobic008G086500 Sobic005G006400--Sobic002G194201 Sobic005G006400--Sobic007G134501 Sobic005G006400--Sobic005G006100 Sobic005G006400--Sobic007G014000 Sobic005G006400--Sobic010G216100 Sobic008G086500--Sobic005G006400 Sobic008G086500--Sobic010G240300 Sobic008G086500--Sobic007G035200 Sobic008G086500--Sobic003G007650 Sobic008G086500--Sobic002G194201 Sobic008G086500--Sobic010G216100 Sobic008G086500--Sobic007G014000 Sobic002G194300 Sobic002G194300 Sobic008G086500--Sobic002G194300 Sobic008G086500--Sobic007G134501
Octagon: transcription factors


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