Gene annotation
Transcriptome id Sobic.004G065600.1
Synonym IRX4, Sb04g005510, CCR1, ATCCR1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Cinnamoyl-CoA reductase CCR1 (At) (PubMedID : 27208977)
cinnamoyl CoA reductase, putative, expressed
UniProt C5XWV7
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF432
NCBI CDD KOG1502; Flavonol reductase/cinnamoyl-CoA reductase
KEGG Orthology -
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT1G15950 : cinnamoyl coa reductase 1
RAP-DB (Rice) LOC_Os02g08420.1 : cinnamoyl CoA reductase, putative, expressed
MaizeGDB (Corn) Zm00025a019226
Brachypodium KQJ93668 , KQJ93669
Barley HORVU5Hr1G050940.3 , HORVU5Hr1G050940.2 , HORVU5Hr1G050940.1 , HORVU5Hr1G050940.5 , HORVU5Hr1G050940.4 , HORVU6Hr1G028980.9 , HORVU6Hr1G028980.8 , HORVU6Hr1G028980.3 , HORVU6Hr1G028980.7 , HORVU6Hr1G028980.5 , HORVU6Hr1G028980.4 , HORVU6Hr1G028980.19 , HORVU6Hr1G028980.18 , HORVU6Hr1G028980.12 , HORVU6Hr1G028980.11 , HORVU6Hr1G028980.17 , HORVU6Hr1G028980.15 , HORVU6Hr1G028980.14
Wheat TraesCS6B02G175600 , TraesCS6B02G175600 , TraesCS5A02G163400 , TraesCS6A02G147300 , TraesCS6D02G136600 , TraesCS6D02G136600 , TraesCS5D02G168400 , TraesCS6D02G136600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G322600 harpin-induced protein 1 domain containing protein, expressed -
2 Sobic.007G064000 expressed protein -
3 Sobic.007G221201 - -
4 Sobic.008G079733 - -
5 Sobic.008G139250 - -
6 Sobic.010G147300 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
7 Sobic.004G358200 RING-H2 finger protein, putative, expressed -
8 Sobic.003G126750 - -
9 Sobic.005G031901 - -
10 Sobic.006G141400 expressed protein -
11 Sobic.001G261464 - -
12 Sobic.002G175700 STE_MEK_ste7_MAP2K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
13 Sobic.004G358301 - -
14 Sobic.002G153900 ZOS9-02 - C2H2 zinc finger protein, expressed -
15 Sobic.004G243700 - -
16 Sobic.007G007600 OsFBL38 - F-box domain and LRR containing protein, expressed -
17 Sobic.006G109600 - -
18 Sobic.009G166900 expressed protein -
19 Sobic.003G281700 pentatricopeptide, putative, expressed -
20 Sobic.002G100100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G065600 Sobic004G065600 Sobic002G322600 Sobic002G322600 Sobic004G065600--Sobic002G322600 Sobic007G064000 Sobic007G064000 Sobic004G065600--Sobic007G064000 Sobic007G221201 Sobic007G221201 Sobic004G065600--Sobic007G221201 Sobic008G079733 Sobic008G079733 Sobic004G065600--Sobic008G079733 Sobic008G139250 Sobic008G139250 Sobic004G065600--Sobic008G139250 Sobic010G147300 Sobic010G147300 Sobic004G065600--Sobic010G147300 Sobic004G358200 Sobic004G358200 Sobic004G065600--Sobic004G358200 Sobic003G126750 Sobic003G126750 Sobic004G065600--Sobic003G126750 Sobic005G031901 Sobic005G031901 Sobic004G065600--Sobic005G031901 Sobic006G141400 Sobic006G141400 Sobic002G322600--Sobic006G141400 Sobic007G007600 Sobic007G007600 Sobic002G322600--Sobic007G007600 Sobic007G074800 Sobic007G074800 Sobic002G322600--Sobic007G074800 Sobic002G036500 Sobic002G036500 Sobic002G322600--Sobic002G036500 Sobic002G322600--Sobic007G064000 Sobic004G243700 Sobic004G243700 Sobic002G322600--Sobic004G243700 Sobic002G208850 Sobic002G208850 Sobic002G322600--Sobic002G208850 Sobic002G322600--Sobic008G139250 Sobic007G048400 Sobic007G048400 Sobic002G322600--Sobic007G048400 Sobic007G064000--Sobic005G031901 Sobic002G175700 Sobic002G175700 Sobic007G064000--Sobic002G175700 Sobic006G109600 Sobic006G109600 Sobic007G064000--Sobic006G109600 Sobic007G064000--Sobic003G126750 Sobic007G064000--Sobic010G147300 Sobic001G261464 Sobic001G261464 Sobic007G064000--Sobic001G261464 Sobic002G100100 Sobic002G100100 Sobic007G064000--Sobic002G100100 Sobic007G064000--Sobic007G007600 Sobic007G064000--Sobic004G358200 Sobic007G221201--Sobic007G007600 Sobic007G221201--Sobic004G065600 Sobic007G221201--Sobic002G036500 Sobic007G221201--Sobic006G141400 Sobic007G221201--Sobic002G322600 Sobic007G221201--Sobic007G064000 Sobic010G128200 Sobic010G128200 Sobic007G221201--Sobic010G128200 Sobic008G068133 Sobic008G068133 Sobic007G221201--Sobic008G068133 Sobic007G221201--Sobic008G139250 Sobic008G079733--Sobic008G139250 Sobic008G079733--Sobic004G358200 Sobic008G079733--Sobic005G031901 Sobic008G079733--Sobic003G126750 Sobic008G079733--Sobic006G109600 Sobic008G079733--Sobic001G261464 Sobic008G079733--Sobic010G147300 Sobic008G079733--Sobic002G100100 Sobic002G026150 Sobic002G026150 Sobic008G079733--Sobic002G026150 Sobic008G139250--Sobic005G031901 Sobic008G139250--Sobic001G261464 Sobic008G139250--Sobic003G126750 Sobic008G139250--Sobic006G109600 Sobic008G139250--Sobic004G358200 Sobic008G139250--Sobic010G147300 Sobic008G139250--Sobic002G100100 Sobic008G139250--Sobic008G079733 Sobic008G139250--Sobic002G026150 Sobic010G147300--Sobic005G031901 Sobic010G147300--Sobic006G109600 Sobic010G147300--Sobic003G126750 Sobic010G147300--Sobic001G261464 Sobic004G358301 Sobic004G358301 Sobic010G147300--Sobic004G358301 Sobic010G147300--Sobic002G100100 Sobic010G147300--Sobic002G026150 Sobic010G147300--Sobic002G175700 Sobic010G147300--Sobic007G064000 Sobic004G358200--Sobic001G261464 Sobic004G358200--Sobic003G126750 Sobic002G153900 Sobic002G153900 Sobic004G358200--Sobic002G153900 Sobic004G358200--Sobic005G031901 Sobic004G358200--Sobic006G109600 Sobic006G026300 Sobic006G026300 Sobic004G358200--Sobic006G026300 Sobic004G358200--Sobic002G100100 Sobic004G358200--Sobic004G243700 Sobic004G358200--Sobic002G026150 Sobic003G126750--Sobic006G109600 Sobic003G126750--Sobic005G031901 Sobic003G126750--Sobic002G026150 Sobic003G126750--Sobic001G261464 Sobic003G126750--Sobic010G147300 Sobic003G126750--Sobic002G100100 Sobic003G126750--Sobic004G358301 Sobic003G126750--Sobic004G243700 Sobic003G126750--Sobic002G153900 Sobic005G031901--Sobic010G147300 Sobic005G031901--Sobic006G109600 Sobic005G031901--Sobic003G126750 Sobic005G031901--Sobic001G261464 Sobic005G031901--Sobic004G358301 Sobic005G031901--Sobic002G100100 Sobic005G031901--Sobic002G026150 Sobic005G031901--Sobic002G175700 Sobic005G031901--Sobic007G064000
Octagon: transcription factors


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