Gene annotation
| Transcriptome id | Sobic.004G338100.1,Sobic.004G338100.2 |
|---|---|
| Synonym | |
| Functional annotation | glycogen synthase 1, putative, expressed |
| UniProt | C5XVX9 , A0A0R9UL77 , A0A194YT06 |
| Pfam | PF08323 |
| Panther DB | PTHR12526 PTHR12526:SF382 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G65685 : UDP-Glycosyltransferase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g56320.1 : glycogen synthase 1, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022536 , Zm00025a032855 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G338100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G030700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 2 | Sobic.003G287000 | BURP domain containing protein, expressed | - |
| 3 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
| 4 | Sobic.001G500100 | dehydrogenase, putative, expressed | - |
| 5 | Sobic.007G108800 | - | - |
| 6 | Sobic.001G249600 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 7 | Sobic.001G535600 | LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 8 | Sobic.007G069000 | glyoxalase family protein, putative, expressed | K01759: GLO1, lactoylglutathione lyase |
| 9 | Sobic.006G084400 | OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 10 | Sobic.005G190800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 11 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 12 | Sobic.006G227000 | leucoanthocyanidin reductase, putative, expressed | K08695: anthocyanidin reductase |
| 13 | Sobic.007G069500 | expressed protein | - |
| 14 | Sobic.006G253900 | absent or strongly suppressed during the accumulation of 3-deoxyanthocyanidins(PubMedID : 20529887)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed | K00475: naringenin 3-dioxygenase |
| 15 | Sobic.002G128600 | lecithin:cholesterol acyltransferase, putative, expressed | K06129: lysophospholipase III |
| 16 | Sobic.003G230900 | function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed | K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase |
| 17 | Sobic.003G007800 | phosphorylase domain containing protein, putative, expressed | - |
| 18 | Sobic.002G225400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed | K09843: (+)-abscisic acid 8'-hydroxylase |
| 19 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 20 | Sobic.001G374900 | RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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