Gene annotation
Transcriptome id Sobic.001G374900.1
Synonym Sb01g035600, RALFL33
Functional annotation RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed
UniProt C5X0M6
Pfam PF05498
Panther DB PTHR33136 PTHR33136:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16570 : rapid alkalinization factor 23
RAP-DB (Rice) LOC_Os03g22440.1 : RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002411
Brachypodium KQK21729
Barley HORVU4Hr1G046590.2 , HORVU4Hr1G046590.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G249500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
3 Sobic.006G175700 down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed -
4 Sobic.006G227000 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
5 Sobic.005G190800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
6 Sobic.008G030700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.003G317800 lysM domain containing protein, putative -
8 Sobic.005G036500 AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
9 Sobic.001G249600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
11 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
12 Sobic.003G278400 DUF581 domain containing protein, expressed -
13 Sobic.004G328900 expressed protein -
14 Sobic.003G230900 function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
15 Sobic.002G278800 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
16 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
17 Sobic.004G338100 glycogen synthase 1, putative, expressed -
18 Sobic.007G069500 expressed protein -
19 Sobic.002G278700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
20 Sobic.001G185600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic001G374900 Sobic001G374900 Sobic001G249500 Sobic001G249500 Sobic001G374900--Sobic001G249500 Sobic002G128600 Sobic002G128600 Sobic001G374900--Sobic002G128600 Sobic006G175700 Sobic006G175700 Sobic001G374900--Sobic006G175700 Sobic006G227000 Sobic006G227000 Sobic001G374900--Sobic006G227000 Sobic005G190800 Sobic005G190800 Sobic001G374900--Sobic005G190800 Sobic008G030700 Sobic008G030700 Sobic001G374900--Sobic008G030700 Sobic003G317800 Sobic003G317800 Sobic001G374900--Sobic003G317800 Sobic005G036500 Sobic005G036500 Sobic001G374900--Sobic005G036500 Sobic001G249600 Sobic001G249600 Sobic001G374900--Sobic001G249600 Sobic001G249500--Sobic006G227000 Sobic001G249500--Sobic002G128600 Sobic001G249500--Sobic006G175700 Sobic001G249500--Sobic008G030700 Sobic001G249500--Sobic005G190800 Sobic001G249500--Sobic001G249600 Sobic007G069500 Sobic007G069500 Sobic001G249500--Sobic007G069500 Sobic003G007800 Sobic003G007800 Sobic001G249500--Sobic003G007800 Sobic007G195300 Sobic007G195300 Sobic001G249500--Sobic007G195300 Sobic002G128600--Sobic006G227000 Sobic002G128600--Sobic003G317800 Sobic002G128600--Sobic007G069500 Sobic002G128600--Sobic005G190800 Sobic002G128600--Sobic001G249500 Sobic004G328900 Sobic004G328900 Sobic002G128600--Sobic004G328900 Sobic001G379300 Sobic001G379300 Sobic002G128600--Sobic001G379300 Sobic001G255300 Sobic001G255300 Sobic002G128600--Sobic001G255300 Sobic002G128600--Sobic003G007800 Sobic006G175700--Sobic005G190800 Sobic006G175700--Sobic008G030700 Sobic002G278800 Sobic002G278800 Sobic006G175700--Sobic002G278800 Sobic006G175700--Sobic003G007800 Sobic006G175700--Sobic001G249500 Sobic001G338000 Sobic001G338000 Sobic006G175700--Sobic001G338000 Sobic006G175700--Sobic002G128600 Sobic003G131800 Sobic003G131800 Sobic006G175700--Sobic003G131800 Sobic002G278700 Sobic002G278700 Sobic006G175700--Sobic002G278700 Sobic006G227000--Sobic002G128600 Sobic006G227000--Sobic001G249500 Sobic006G227000--Sobic007G069500 Sobic006G227000--Sobic001G249600 Sobic006G253900 Sobic006G253900 Sobic006G227000--Sobic006G253900 Sobic006G227000--Sobic005G190800 Sobic006G227000--Sobic006G175700 Sobic006G227000--Sobic003G317800 Sobic003G230900 Sobic003G230900 Sobic006G227000--Sobic003G230900 Sobic005G190800--Sobic006G175700 Sobic005G190800--Sobic002G128600 Sobic005G190800--Sobic003G007800 Sobic005G190800--Sobic006G227000 Sobic005G190800--Sobic001G249500 Sobic005G190800--Sobic003G317800 Sobic004G038300 Sobic004G038300 Sobic005G190800--Sobic004G038300 Sobic005G190800--Sobic004G328900 Sobic005G190800--Sobic007G069500 Sobic008G030700--Sobic006G175700 Sobic008G030700--Sobic002G278800 Sobic008G030700--Sobic002G278700 Sobic008G030700--Sobic001G249500 Sobic008G030700--Sobic003G131800 Sobic010G012400 Sobic010G012400 Sobic008G030700--Sobic010G012400 Sobic008G030700--Sobic005G190800 Sobic001G535600 Sobic001G535600 Sobic008G030700--Sobic001G535600 Sobic003G173700 Sobic003G173700 Sobic008G030700--Sobic003G173700 Sobic003G317800--Sobic004G328900 Sobic003G317800--Sobic002G128600 Sobic003G317800--Sobic001G379300 Sobic003G317800--Sobic001G255300 Sobic008G163200 Sobic008G163200 Sobic003G317800--Sobic008G163200 Sobic003G317800--Sobic004G038300 Sobic002G416950 Sobic002G416950 Sobic003G317800--Sobic002G416950 Sobic003G317800--Sobic003G007800 Sobic003G317800--Sobic007G069500 Sobic003G287000 Sobic003G287000 Sobic005G036500--Sobic003G287000 Sobic003G229700 Sobic003G229700 Sobic005G036500--Sobic003G229700 Sobic008G189500 Sobic008G189500 Sobic005G036500--Sobic008G189500 Sobic001G472000 Sobic001G472000 Sobic005G036500--Sobic001G472000 Sobic005G036500--Sobic003G007800 Sobic005G036500--Sobic002G128600 Sobic001G531000 Sobic001G531000 Sobic005G036500--Sobic001G531000 Sobic001G363700 Sobic001G363700 Sobic005G036500--Sobic001G363700 Sobic005G218700 Sobic005G218700 Sobic005G036500--Sobic005G218700 Sobic001G249600--Sobic003G230900 Sobic001G249600--Sobic006G227000 Sobic001G249600--Sobic001G249500 Sobic001G249600--Sobic002G128600 Sobic004G000700 Sobic004G000700 Sobic001G249600--Sobic004G000700 Sobic001G249600--Sobic006G253900 Sobic001G249600--Sobic005G190800 Sobic001G249600--Sobic006G175700 Sobic001G249600--Sobic007G069500
Octagon: transcription factors


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