Gene annotation
Transcriptome id Sobic.001G185600.1
Synonym Sb01g016120
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5WUC6
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF160
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G21690 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g37490.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017375 , Zm00025a017379 , Zm00025a014789 , Zm00025a014788 , Zm00025a007085 , Zm00025a007080 , Zm00025a048219 , Zm00025a007083
Brachypodium PNT75015 , PNT75014 , KQK16109 , KQK15995 , KQK15996 , KQK14361 , KQK14360 , PNT75013
Barley HORVU2Hr1G046420.8 , HORVU2Hr1G046420.4 , HORVU2Hr1G046420.5 , HORVU2Hr1G046420.7 , HORVU2Hr1G046420.2 , HORVU0Hr1G022320.3 , HORVU0Hr1G022320.2 , HORVU0Hr1G022320.1 , HORVU3Hr1G110380.1 , HORVU3Hr1G110380.2 , HORVU3Hr1G110380.3 , HORVU3Hr1G110460.5 , HORVU3Hr1G110460.4 , HORVU3Hr1G110460.1 , HORVU3Hr1G110460.3 , HORVU3Hr1G110460.2 , HORVU2Hr1G046420.16 , HORVU2Hr1G046420.17 , HORVU2Hr1G046420.14 , HORVU2Hr1G046420.10 , HORVU5Hr1G082890.10 , HORVU5Hr1G082890.11 , HORVU5Hr1G082890.9 , HORVU5Hr1G082890.2 , HORVU5Hr1G082890.3 , HORVU5Hr1G082890.1 , HORVU5Hr1G082890.6 , HORVU5Hr1G082890.7 , HORVU5Hr1G082890.5
Wheat TraesCS2A02G222300 , TraesCSU02G124400 , TraesCSU02G124400 , TraesCS1B02G037000 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS5A02G326300 , TraesCS3A02G499200 , TraesCS5A02G326300 , TraesCS5A02G553200 , TraesCS7D02G272900 , TraesCS5A02G326300 , TraesCS3D02G506100 , TraesCS3D02G506100 , TraesCS1A02G029900 , TraesCS3B02G562400 , TraesCS3B02G562400 , TraesCS7A02G272800 , TraesCS2D02G228200 , TraesCS2D02G228200 , TraesCS5A02G326700 , TraesCS3B02G563700 , TraesCS2B02G247700 , TraesCS2B02G247700 , TraesCS3A02G499300 , TraesCS4B02G388800 , TraesCS3B02G485100 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS7B02G170800 , TraesCS3A02G499200 , TraesCS1D02G030400
Populus -


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cDNA sequences
Sobic.001G185600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G374900 RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed -
2 Sobic.002G388600 pectinacetylesterase domain containing protein, expressed -
3 Sobic.007G134400 Regulator of chromosome condensation domain containing protein, expressed -
4 Sobic.001G108700 SEC14 cytosolic factor family protein, putative, expressed -
5 Sobic.003G278400 DUF581 domain containing protein, expressed -
6 Sobic.008G166050 - -
7 Sobic.008G030900 LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.002G225000 remorin C-terminal domain containing protein, putative, expressed -
9 Sobic.004G338100 glycogen synthase 1, putative, expressed -
10 Sobic.003G234101 - -
11 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
12 Sobic.007G123800 DUF581 domain containing protein, expressed -
13 Sobic.003G227900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
14 Sobic.001G535600 LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
16 Sobic.010G240700 PPR repeat containing protein, expressed -
17 Sobic.010G171300 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
18 Sobic.001G500100 dehydrogenase, putative, expressed -
19 Sobic.007G190200 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
20 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase


Gene co-expression network
sample Sobic001G185600 Sobic001G185600 Sobic001G374900 Sobic001G374900 Sobic001G185600--Sobic001G374900 Sobic002G388600 Sobic002G388600 Sobic001G185600--Sobic002G388600 Sobic007G134400 Sobic007G134400 Sobic001G185600--Sobic007G134400 Sobic001G108700 Sobic001G108700 Sobic001G185600--Sobic001G108700 Sobic003G278400 Sobic003G278400 Sobic001G185600--Sobic003G278400 Sobic008G166050 Sobic008G166050 Sobic001G185600--Sobic008G166050 Sobic008G030900 Sobic008G030900 Sobic001G185600--Sobic008G030900 Sobic002G225000 Sobic002G225000 Sobic001G185600--Sobic002G225000 Sobic004G338100 Sobic004G338100 Sobic001G185600--Sobic004G338100 Sobic001G249500 Sobic001G249500 Sobic001G374900--Sobic001G249500 Sobic002G128600 Sobic002G128600 Sobic001G374900--Sobic002G128600 Sobic006G175700 Sobic006G175700 Sobic001G374900--Sobic006G175700 Sobic006G227000 Sobic006G227000 Sobic001G374900--Sobic006G227000 Sobic005G190800 Sobic005G190800 Sobic001G374900--Sobic005G190800 Sobic008G030700 Sobic008G030700 Sobic001G374900--Sobic008G030700 Sobic003G317800 Sobic003G317800 Sobic001G374900--Sobic003G317800 Sobic005G036500 Sobic005G036500 Sobic001G374900--Sobic005G036500 Sobic001G249600 Sobic001G249600 Sobic001G374900--Sobic001G249600 Sobic002G388600--Sobic002G225000 Sobic002G428900 Sobic002G428900 Sobic002G388600--Sobic002G428900 Sobic009G231100 Sobic009G231100 Sobic002G388600--Sobic009G231100 Sobic002G377300 Sobic002G377300 Sobic002G388600--Sobic002G377300 Sobic002G388600--Sobic008G166050 Sobic005G022000 Sobic005G022000 Sobic002G388600--Sobic005G022000 Sobic003G165800 Sobic003G165800 Sobic002G388600--Sobic003G165800 Sobic007G050600 Sobic007G050600 Sobic002G388600--Sobic007G050600 Sobic010G054000 Sobic010G054000 Sobic002G388600--Sobic010G054000 Sobic001G460200 Sobic001G460200 Sobic007G134400--Sobic001G460200 Sobic006G013800 Sobic006G013800 Sobic007G134400--Sobic006G013800 Sobic002G244500 Sobic002G244500 Sobic007G134400--Sobic002G244500 Sobic009G190000 Sobic009G190000 Sobic007G134400--Sobic009G190000 Sobic001G221300 Sobic001G221300 Sobic007G134400--Sobic001G221300 Sobic003G265500 Sobic003G265500 Sobic007G134400--Sobic003G265500 Sobic006G003901 Sobic006G003901 Sobic007G134400--Sobic006G003901 Sobic006G155700 Sobic006G155700 Sobic007G134400--Sobic006G155700 Sobic002G353300 Sobic002G353300 Sobic007G134400--Sobic002G353300 Sobic010G169700 Sobic010G169700 Sobic001G108700--Sobic010G169700 Sobic006G124200 Sobic006G124200 Sobic001G108700--Sobic006G124200 Sobic009G102400 Sobic009G102400 Sobic001G108700--Sobic009G102400 Sobic001G108700--Sobic001G185600 Sobic004G214300 Sobic004G214300 Sobic001G108700--Sobic004G214300 Sobic003G053700 Sobic003G053700 Sobic001G108700--Sobic003G053700 Sobic002G073100 Sobic002G073100 Sobic001G108700--Sobic002G073100 Sobic003G419400 Sobic003G419400 Sobic001G108700--Sobic003G419400 Sobic003G146800 Sobic003G146800 Sobic001G108700--Sobic003G146800 Sobic002G316900 Sobic002G316900 Sobic003G278400--Sobic002G316900 Sobic003G278400--Sobic001G374900 Sobic006G157100 Sobic006G157100 Sobic003G278400--Sobic006G157100 Sobic007G195300 Sobic007G195300 Sobic003G278400--Sobic007G195300 Sobic001G460100 Sobic001G460100 Sobic003G278400--Sobic001G460100 Sobic003G278400--Sobic002G225000 Sobic003G028000 Sobic003G028000 Sobic003G278400--Sobic003G028000 Sobic004G253500 Sobic004G253500 Sobic003G278400--Sobic004G253500 Sobic006G034300 Sobic006G034300 Sobic003G278400--Sobic006G034300 Sobic008G166050--Sobic002G388600 Sobic008G166050--Sobic005G036500 Sobic003G148400 Sobic003G148400 Sobic008G166050--Sobic003G148400 Sobic001G531000 Sobic001G531000 Sobic008G166050--Sobic001G531000 Sobic008G166050--Sobic001G374900 Sobic008G114700 Sobic008G114700 Sobic008G166050--Sobic008G114700 Sobic008G166050--Sobic008G030900 Sobic003G287000 Sobic003G287000 Sobic008G166050--Sobic003G287000 Sobic008G166050--Sobic002G377300 Sobic007G225700 Sobic007G225700 Sobic008G030900--Sobic007G225700 Sobic007G192200 Sobic007G192200 Sobic008G030900--Sobic007G192200 Sobic002G064900 Sobic002G064900 Sobic008G030900--Sobic002G064900 Sobic003G404000 Sobic003G404000 Sobic008G030900--Sobic003G404000 Sobic003G223000 Sobic003G223000 Sobic008G030900--Sobic003G223000 Sobic005G102800 Sobic005G102800 Sobic008G030900--Sobic005G102800 Sobic010G012001 Sobic010G012001 Sobic008G030900--Sobic010G012001 Sobic003G140800 Sobic003G140800 Sobic008G030900--Sobic003G140800 Sobic010G152000 Sobic010G152000 Sobic008G030900--Sobic010G152000 Sobic002G225000--Sobic009G231100 Sobic003G078300 Sobic003G078300 Sobic002G225000--Sobic003G078300 Sobic002G225000--Sobic002G377300 Sobic001G379100 Sobic001G379100 Sobic002G225000--Sobic001G379100 Sobic010G165100 Sobic010G165100 Sobic002G225000--Sobic010G165100 Sobic002G225000--Sobic003G148400 Sobic002G225000--Sobic003G223000 Sobic002G225000--Sobic002G388600 Sobic002G078000 Sobic002G078000 Sobic002G225000--Sobic002G078000 Sobic004G338100--Sobic008G030700 Sobic004G338100--Sobic003G287000 Sobic004G338100--Sobic006G175700 Sobic001G500100 Sobic001G500100 Sobic004G338100--Sobic001G500100 Sobic007G108800 Sobic007G108800 Sobic004G338100--Sobic007G108800 Sobic004G338100--Sobic001G249600 Sobic001G535600 Sobic001G535600 Sobic004G338100--Sobic001G535600 Sobic007G069000 Sobic007G069000 Sobic004G338100--Sobic007G069000 Sobic006G084400 Sobic006G084400 Sobic004G338100--Sobic006G084400
Octagon: transcription factors


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