Gene annotation
Transcriptome id Sobic.007G134400.1
Synonym Sb07g021020
Functional annotation Regulator of chromosome condensation domain containing protein, expressed
UniProt A0A1B6PHM8
Pfam PF00415
Panther DB PTHR22870 PTHR22870:SF206
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G16040 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os08g33390.1 : Regulator of chromosome condensation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005976 , Zm00025a031108
Brachypodium KQJ98367
Barley HORVU7Hr1G062090.2 , HORVU7Hr1G062090.3 , HORVU7Hr1G062090.1 , HORVU7Hr1G062090.6 , HORVU7Hr1G062090.5 , HORVU7Hr1G062090.9 , HORVU7Hr1G062090.11 , HORVU7Hr1G062090.12 , HORVU7Hr1G062090.13
Wheat TraesCS7B02G200200 , TraesCS7A02G284800 , TraesCS7A02G284800 , TraesCS7A02G284800 , TraesCS7D02G282600
Populus -


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cDNA sequences
Sobic.007G134400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G460200 PPR repeat domain containing protein, putative, expressed -
2 Sobic.006G013800 CBS domain containing membrane protein, putative, expressed -
3 Sobic.002G244500 ATP phosphoribosyltransferase, putative, expressed K00765: ATP phosphoribosyltransferase
4 Sobic.009G190000 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.001G221300 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase
6 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
7 Sobic.006G003901 - -
8 Sobic.006G155700 ABC transporter(PubMedID : 23463491)@white-brown complex homolog protein 11, putative, expressed -
9 Sobic.002G353300 Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
10 Sobic.001G524100 expressed protein K11792: DET1- and DDB1-associated protein 1
11 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
12 Sobic.006G091300 glutathione S-transferase, N-terminal domain containing protein, expressed K03354: anaphase-promoting complex subunit 7
13 Sobic.006G047300 Minichromosome maintenance (MCM2/3/5) family protein("PubMedID : 26759170,PubMedID : 24597475")@EMB1688, putative, expressed K06949: rsgA, ribosome biogenesis GTPase / thiamine phosphate phosphatase
14 Sobic.004G020300 expressed protein -
15 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
16 Sobic.004G343900 expressed protein -
17 Sobic.001G222600 cyanate hydratase, putative, expressed K01725: cyanate lyase
18 Sobic.010G008700 expressed protein -
19 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
20 Sobic.007G101500 "Bt2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659904)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase


Gene co-expression network
sample Sobic007G134400 Sobic007G134400 Sobic001G460200 Sobic001G460200 Sobic007G134400--Sobic001G460200 Sobic006G013800 Sobic006G013800 Sobic007G134400--Sobic006G013800 Sobic002G244500 Sobic002G244500 Sobic007G134400--Sobic002G244500 Sobic009G190000 Sobic009G190000 Sobic007G134400--Sobic009G190000 Sobic001G221300 Sobic001G221300 Sobic007G134400--Sobic001G221300 Sobic003G265500 Sobic003G265500 Sobic007G134400--Sobic003G265500 Sobic006G003901 Sobic006G003901 Sobic007G134400--Sobic006G003901 Sobic006G155700 Sobic006G155700 Sobic007G134400--Sobic006G155700 Sobic002G353300 Sobic002G353300 Sobic007G134400--Sobic002G353300 Sobic006G047300 Sobic006G047300 Sobic001G460200--Sobic006G047300 Sobic006G263800 Sobic006G263800 Sobic001G460200--Sobic006G263800 Sobic001G281500 Sobic001G281500 Sobic001G460200--Sobic001G281500 Sobic003G114100 Sobic003G114100 Sobic001G460200--Sobic003G114100 Sobic004G015700 Sobic004G015700 Sobic001G460200--Sobic004G015700 Sobic004G255500 Sobic004G255500 Sobic001G460200--Sobic004G255500 Sobic001G099000 Sobic001G099000 Sobic001G460200--Sobic001G099000 Sobic002G140000 Sobic002G140000 Sobic001G460200--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G460200--Sobic006G204100 Sobic005G194100 Sobic005G194100 Sobic006G013800--Sobic005G194100 Sobic006G013800--Sobic001G221300 Sobic008G172700 Sobic008G172700 Sobic006G013800--Sobic008G172700 Sobic004G251500 Sobic004G251500 Sobic006G013800--Sobic004G251500 Sobic002G267900 Sobic002G267900 Sobic006G013800--Sobic002G267900 Sobic004G239100 Sobic004G239100 Sobic006G013800--Sobic004G239100 Sobic004G020300 Sobic004G020300 Sobic006G013800--Sobic004G020300 Sobic001G023700 Sobic001G023700 Sobic006G013800--Sobic001G023700 Sobic009G091850 Sobic009G091850 Sobic006G013800--Sobic009G091850 Sobic009G124000 Sobic009G124000 Sobic002G244500--Sobic009G124000 Sobic006G275800 Sobic006G275800 Sobic002G244500--Sobic006G275800 Sobic008G067100 Sobic008G067100 Sobic002G244500--Sobic008G067100 Sobic010G221600 Sobic010G221600 Sobic002G244500--Sobic010G221600 Sobic002G244500--Sobic003G265500 Sobic004G275600 Sobic004G275600 Sobic002G244500--Sobic004G275600 Sobic004G144400 Sobic004G144400 Sobic002G244500--Sobic004G144400 Sobic003G420900 Sobic003G420900 Sobic002G244500--Sobic003G420900 Sobic002G333100 Sobic002G333100 Sobic002G244500--Sobic002G333100 Sobic002G279700 Sobic002G279700 Sobic009G190000--Sobic002G279700 Sobic001G033100 Sobic001G033100 Sobic009G190000--Sobic001G033100 Sobic009G190000--Sobic006G013800 Sobic003G035900 Sobic003G035900 Sobic009G190000--Sobic003G035900 Sobic003G022300 Sobic003G022300 Sobic009G190000--Sobic003G022300 Sobic005G202500 Sobic005G202500 Sobic009G190000--Sobic005G202500 Sobic008G171300 Sobic008G171300 Sobic009G190000--Sobic008G171300 Sobic002G159100 Sobic002G159100 Sobic009G190000--Sobic002G159100 Sobic006G261700 Sobic006G261700 Sobic009G190000--Sobic006G261700 Sobic003G069200 Sobic003G069200 Sobic001G221300--Sobic003G069200 Sobic003G150600 Sobic003G150600 Sobic001G221300--Sobic003G150600 Sobic003G433900 Sobic003G433900 Sobic001G221300--Sobic003G433900 Sobic002G198600 Sobic002G198600 Sobic001G221300--Sobic002G198600 Sobic002G227700 Sobic002G227700 Sobic001G221300--Sobic002G227700 Sobic003G386300 Sobic003G386300 Sobic001G221300--Sobic003G386300 Sobic006G248200 Sobic006G248200 Sobic001G221300--Sobic006G248200 Sobic001G221300--Sobic006G013800 Sobic004G311100 Sobic004G311100 Sobic001G221300--Sobic004G311100 Sobic003G225100 Sobic003G225100 Sobic003G265500--Sobic003G225100 Sobic005G184300 Sobic005G184300 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800 Sobic006G003951 Sobic006G003951 Sobic006G003901--Sobic006G003951 Sobic006G003901--Sobic007G134400 Sobic001G353800 Sobic001G353800 Sobic006G003901--Sobic001G353800 Sobic005G167400 Sobic005G167400 Sobic006G003901--Sobic005G167400 Sobic001G011300 Sobic001G011300 Sobic006G003901--Sobic001G011300 Sobic006G003901--Sobic003G265500 Sobic006G200800 Sobic006G200800 Sobic006G003901--Sobic006G200800 Sobic006G003901--Sobic006G155700 Sobic003G383600 Sobic003G383600 Sobic006G003901--Sobic003G383600 Sobic006G155700--Sobic003G069200 Sobic006G155700--Sobic001G221300 Sobic009G083300 Sobic009G083300 Sobic006G155700--Sobic009G083300 Sobic006G155700--Sobic002G198600 Sobic003G162900 Sobic003G162900 Sobic006G155700--Sobic003G162900 Sobic006G155700--Sobic003G150600 Sobic004G040600 Sobic004G040600 Sobic006G155700--Sobic004G040600 Sobic006G054300 Sobic006G054300 Sobic006G155700--Sobic006G054300 Sobic006G155700--Sobic003G433900 Sobic001G122400 Sobic001G122400 Sobic002G353300--Sobic001G122400 Sobic003G324700 Sobic003G324700 Sobic002G353300--Sobic003G324700 Sobic002G353300--Sobic003G386300 Sobic002G353300--Sobic004G311100 Sobic004G335800 Sobic004G335800 Sobic002G353300--Sobic004G335800 Sobic001G291900 Sobic001G291900 Sobic002G353300--Sobic001G291900 Sobic004G044200 Sobic004G044200 Sobic002G353300--Sobic004G044200 Sobic001G527100 Sobic001G527100 Sobic002G353300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic002G353300--Sobic002G198000
Octagon: transcription factors


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