Gene annotation
Transcriptome id Sobic.009G190000.1
Synonym Sb09g024870, ATSDI1
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5Z0R5
Pfam PF13414
Panther DB PTHR36326 PTHR36326:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04770 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g43040.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044160
Brachypodium KQK23466 , KQK05521
Barley HORVU1Hr1G075210.2 , HORVU1Hr1G075210.1
Wheat TraesCS1B02G337400 , TraesCS1D02G325300 , TraesCS1A02G324000
Populus -


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cDNA sequences
Sobic.009G190000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
2 Sobic.001G033100 expressed protein -
3 Sobic.006G013800 CBS domain containing membrane protein, putative, expressed -
4 Sobic.003G035900 expressed protein -
5 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
6 Sobic.005G202500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tropinone reductase 2, putative, expressed K08081: tropinone reductase I
7 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
8 Sobic.002G159100 chlorophyll A-B binding protein, putative, expressed K14172: light-harvesting complex II chlorophyll a/b binding protein 7
9 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
10 Sobic.002G314300 OsAPRL1 adenosine 5\'-phosphosulfate reductase-like OsAPRL1, expressed K05907: adenylyl-sulfate reductase (glutathione)
11 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
12 Sobic.009G210200 Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed -
13 Sobic.008G064500 TPR domain protein, putative, expressed -
14 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
15 Sobic.007G134400 Regulator of chromosome condensation domain containing protein, expressed -
16 Sobic.008G188600 glyoxalase family protein, putative, expressed -
17 Sobic.006G067500 Ser/Thr protein phosphatase family protein, putative, expressed -
18 Sobic.006G050400 expressed protein -
19 Sobic.005G194100 expressed protein -
20 Sobic.004G028200 UP-9A, putative, expressed -


Gene co-expression network
sample Sobic009G190000 Sobic009G190000 Sobic002G279700 Sobic002G279700 Sobic009G190000--Sobic002G279700 Sobic001G033100 Sobic001G033100 Sobic009G190000--Sobic001G033100 Sobic006G013800 Sobic006G013800 Sobic009G190000--Sobic006G013800 Sobic003G035900 Sobic003G035900 Sobic009G190000--Sobic003G035900 Sobic003G022300 Sobic003G022300 Sobic009G190000--Sobic003G022300 Sobic005G202500 Sobic005G202500 Sobic009G190000--Sobic005G202500 Sobic008G171300 Sobic008G171300 Sobic009G190000--Sobic008G171300 Sobic002G159100 Sobic002G159100 Sobic009G190000--Sobic002G159100 Sobic006G261700 Sobic006G261700 Sobic009G190000--Sobic006G261700 Sobic002G128900 Sobic002G128900 Sobic002G279700--Sobic002G128900 Sobic002G279700--Sobic006G261700 Sobic001G295300 Sobic001G295300 Sobic002G279700--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G279700--Sobic002G200900 Sobic002G233700 Sobic002G233700 Sobic002G279700--Sobic002G233700 Sobic008G188600 Sobic008G188600 Sobic002G279700--Sobic008G188600 Sobic001G020100 Sobic001G020100 Sobic002G279700--Sobic001G020100 Sobic008G006200 Sobic008G006200 Sobic002G279700--Sobic008G006200 Sobic004G307400 Sobic004G307400 Sobic002G279700--Sobic004G307400 Sobic001G033100--Sobic003G022300 Sobic009G210200 Sobic009G210200 Sobic001G033100--Sobic009G210200 Sobic008G015800 Sobic008G015800 Sobic001G033100--Sobic008G015800 Sobic004G020300 Sobic004G020300 Sobic001G033100--Sobic004G020300 Sobic001G222600 Sobic001G222600 Sobic001G033100--Sobic001G222600 Sobic006G084400 Sobic006G084400 Sobic001G033100--Sobic006G084400 Sobic006G067400 Sobic006G067400 Sobic001G033100--Sobic006G067400 Sobic001G033100--Sobic002G200900 Sobic008G064500 Sobic008G064500 Sobic001G033100--Sobic008G064500 Sobic005G194100 Sobic005G194100 Sobic006G013800--Sobic005G194100 Sobic001G221300 Sobic001G221300 Sobic006G013800--Sobic001G221300 Sobic008G172700 Sobic008G172700 Sobic006G013800--Sobic008G172700 Sobic004G251500 Sobic004G251500 Sobic006G013800--Sobic004G251500 Sobic002G267900 Sobic002G267900 Sobic006G013800--Sobic002G267900 Sobic004G239100 Sobic004G239100 Sobic006G013800--Sobic004G239100 Sobic006G013800--Sobic004G020300 Sobic001G023700 Sobic001G023700 Sobic006G013800--Sobic001G023700 Sobic009G091850 Sobic009G091850 Sobic006G013800--Sobic009G091850 Sobic003G035900--Sobic009G190000 Sobic007G069000 Sobic007G069000 Sobic003G035900--Sobic007G069000 Sobic003G373600 Sobic003G373600 Sobic003G035900--Sobic003G373600 Sobic003G035900--Sobic001G222600 Sobic001G057100 Sobic001G057100 Sobic003G035900--Sobic001G057100 Sobic003G035900--Sobic002G159100 Sobic005G004500 Sobic005G004500 Sobic003G035900--Sobic005G004500 Sobic010G047700 Sobic010G047700 Sobic003G035900--Sobic010G047700 Sobic001G446800 Sobic001G446800 Sobic003G035900--Sobic001G446800 Sobic002G227700 Sobic002G227700 Sobic003G022300--Sobic002G227700 Sobic003G022300--Sobic004G020300 Sobic003G022300--Sobic001G221300 Sobic003G022300--Sobic001G295300 Sobic003G022300--Sobic009G210200 Sobic003G022300--Sobic001G033100 Sobic003G022300--Sobic006G067400 Sobic004G343900 Sobic004G343900 Sobic003G022300--Sobic004G343900 Sobic007G004700 Sobic007G004700 Sobic003G022300--Sobic007G004700 Sobic009G043000 Sobic009G043000 Sobic005G202500--Sobic009G043000 Sobic001G076900 Sobic001G076900 Sobic005G202500--Sobic001G076900 Sobic002G370600 Sobic002G370600 Sobic005G202500--Sobic002G370600 Sobic003G371600 Sobic003G371600 Sobic005G202500--Sobic003G371600 Sobic003G370000 Sobic003G370000 Sobic005G202500--Sobic003G370000 Sobic004G051100 Sobic004G051100 Sobic005G202500--Sobic004G051100 Sobic008G061401 Sobic008G061401 Sobic005G202500--Sobic008G061401 Sobic010G245200 Sobic010G245200 Sobic005G202500--Sobic010G245200 Sobic006G188000 Sobic006G188000 Sobic005G202500--Sobic006G188000 Sobic008G171300--Sobic002G233700 Sobic007G052400 Sobic007G052400 Sobic008G171300--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic008G171300--Sobic007G225500 Sobic003G002300 Sobic003G002300 Sobic008G171300--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic008G171300--Sobic008G102000 Sobic009G059300 Sobic009G059300 Sobic008G171300--Sobic009G059300 Sobic004G012900 Sobic004G012900 Sobic008G171300--Sobic004G012900 Sobic009G140600 Sobic009G140600 Sobic008G171300--Sobic009G140600 Sobic009G183700 Sobic009G183700 Sobic008G171300--Sobic009G183700 Sobic004G124400 Sobic004G124400 Sobic002G159100--Sobic004G124400 Sobic002G159100--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic002G159100--Sobic001G220000 Sobic006G063900 Sobic006G063900 Sobic002G159100--Sobic006G063900 Sobic006G108200 Sobic006G108200 Sobic002G159100--Sobic006G108200 Sobic001G350000 Sobic001G350000 Sobic002G159100--Sobic001G350000 Sobic001G436400 Sobic001G436400 Sobic002G159100--Sobic001G436400 Sobic006G197300 Sobic006G197300 Sobic002G159100--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic002G159100--Sobic001G005200 Sobic006G261700--Sobic002G279700 Sobic009G140300 Sobic009G140300 Sobic006G261700--Sobic009G140300 Sobic006G261700--Sobic008G171300 Sobic006G261700--Sobic001G020100 Sobic006G261700--Sobic004G307400 SobicK031800 SobicK031800 Sobic006G261700--SobicK031800 Sobic006G261700--Sobic004G343900 Sobic006G261700--Sobic008G188600 Sobic001G254600 Sobic001G254600 Sobic006G261700--Sobic001G254600
Octagon: transcription factors


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