Gene annotation
Transcriptome id Sobic.002G159100.1
Synonym Sb02g020290
Functional annotation chlorophyll A-B binding protein, putative, expressed
UniProt C5X8D1
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF24
NCBI CDD -
KEGG Orthology K14172; light-harvesting complex II chlorophyll a/b binding protein 7
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT1G76570 : Chlorophyll A-B binding family protein
RAP-DB (Rice) LOC_Os09g12540.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046332
Brachypodium KQJ89748 , KQJ89749 , KQJ89747 , KQJ89750
Barley HORVU5Hr1G054000.7 , HORVU5Hr1G054000.6 , HORVU5Hr1G054000.4 , HORVU5Hr1G054000.5 , HORVU5Hr1G054000.2 , HORVU5Hr1G054000.3 , HORVU5Hr1G054000.1 , HORVU5Hr1G054000.8 , HORVU5Hr1G054000.9
Wheat TraesCS5D02G182000 , TraesCS5D02G182000 , TraesCS5D02G182000 , TraesCS5B02G175000 , TraesCS5A02G177700
Populus -


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cDNA sequences
Sobic.002G159100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
2 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
3 Sobic.001G220000 PPR repeat containing protein, expressed -
4 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
5 Sobic.006G108200 expressed protein -
6 Sobic.001G350000 expressed protein -
7 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
8 Sobic.006G197300 expressed protein -
9 Sobic.001G005200 expressed protein -
10 Sobic.002G351600 prenyltransferase, putative, expressed K12501: homogentisate solanesyltransferase
11 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
12 Sobic.006G265900 thioredoxin, putative, expressed K03671: thioredoxin 1
13 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
15 Sobic.006G050400 expressed protein -
16 Sobic.010G208800 kinase, putative, expressed -
17 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
18 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
19 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein


Gene co-expression network
sample Sobic002G159100 Sobic002G159100 Sobic004G124400 Sobic004G124400 Sobic002G159100--Sobic004G124400 Sobic002G200900 Sobic002G200900 Sobic002G159100--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic002G159100--Sobic001G220000 Sobic006G063900 Sobic006G063900 Sobic002G159100--Sobic006G063900 Sobic006G108200 Sobic006G108200 Sobic002G159100--Sobic006G108200 Sobic001G350000 Sobic001G350000 Sobic002G159100--Sobic001G350000 Sobic001G436400 Sobic001G436400 Sobic002G159100--Sobic001G436400 Sobic006G197300 Sobic006G197300 Sobic002G159100--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic002G159100--Sobic001G005200 Sobic005G028800 Sobic005G028800 Sobic004G124400--Sobic005G028800 Sobic004G124400--Sobic006G063900 Sobic007G166300 Sobic007G166300 Sobic004G124400--Sobic007G166300 Sobic001G167900 Sobic001G167900 Sobic004G124400--Sobic001G167900 Sobic010G231500 Sobic010G231500 Sobic004G124400--Sobic010G231500 Sobic002G061900 Sobic002G061900 Sobic004G124400--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic004G124400--Sobic006G097500 Sobic004G124400--Sobic001G436400 Sobic004G359600 Sobic004G359600 Sobic004G124400--Sobic004G359600 Sobic002G200900--Sobic006G108200 Sobic004G281900 Sobic004G281900 Sobic002G200900--Sobic004G281900 Sobic002G351600 Sobic002G351600 Sobic002G200900--Sobic002G351600 Sobic002G200900--Sobic001G220000 Sobic004G055000 Sobic004G055000 Sobic002G200900--Sobic004G055000 Sobic003G275200 Sobic003G275200 Sobic002G200900--Sobic003G275200 Sobic006G155500 Sobic006G155500 Sobic002G200900--Sobic006G155500 Sobic006G050400 Sobic006G050400 Sobic002G200900--Sobic006G050400 Sobic002G200900--Sobic002G159100 Sobic001G220000--Sobic004G124400 Sobic004G317700 Sobic004G317700 Sobic001G220000--Sobic004G317700 Sobic004G300100 Sobic004G300100 Sobic001G220000--Sobic004G300100 Sobic001G220000--Sobic006G108200 Sobic002G356900 Sobic002G356900 Sobic001G220000--Sobic002G356900 Sobic001G220000--Sobic010G231500 Sobic001G220000--Sobic001G436400 Sobic004G154800 Sobic004G154800 Sobic001G220000--Sobic004G154800 Sobic001G220000--Sobic002G351600 Sobic006G063900--Sobic004G124400 Sobic006G063900--Sobic001G167900 Sobic006G063900--Sobic005G028800 Sobic004G028300 Sobic004G028300 Sobic006G063900--Sobic004G028300 Sobic006G063900--Sobic007G166300 Sobic006G235350 Sobic006G235350 Sobic006G063900--Sobic006G235350 Sobic006G140500 Sobic006G140500 Sobic006G063900--Sobic006G140500 Sobic001G015200 Sobic001G015200 Sobic006G063900--Sobic001G015200 Sobic007G169100 Sobic007G169100 Sobic006G063900--Sobic007G169100 Sobic006G108200--Sobic003G275200 Sobic006G108200--Sobic002G351600 Sobic006G108200--Sobic004G055000 Sobic006G108200--Sobic004G028300 Sobic006G108200--Sobic004G154800 Sobic006G108200--Sobic002G200900 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic005G134100 Sobic005G134100 Sobic006G108200--Sobic005G134100 Sobic008G172700 Sobic008G172700 Sobic001G350000--Sobic008G172700 Sobic001G350000--Sobic003G275200 Sobic001G350000--Sobic002G351600 Sobic001G350000--Sobic004G359600 Sobic004G239100 Sobic004G239100 Sobic001G350000--Sobic004G239100 Sobic002G272100 Sobic002G272100 Sobic001G350000--Sobic002G272100 Sobic001G350000--Sobic004G055000 Sobic008G171300 Sobic008G171300 Sobic001G350000--Sobic008G171300 Sobic002G267900 Sobic002G267900 Sobic001G350000--Sobic002G267900 Sobic004G103300 Sobic004G103300 Sobic001G436400--Sobic004G103300 Sobic001G436400--Sobic005G028800 Sobic001G436400--Sobic007G166300 Sobic007G108900 Sobic007G108900 Sobic001G436400--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic001G436400--Sobic001G509200 Sobic001G436400--Sobic001G015200 Sobic001G393300 Sobic001G393300 Sobic001G436400--Sobic001G393300 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800 Sobic001G500600 Sobic001G500600 Sobic006G197300--Sobic001G500600 Sobic004G336200 Sobic004G336200 Sobic006G197300--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic006G197300--Sobic003G232700 Sobic003G094350 Sobic003G094350 Sobic006G197300--Sobic003G094350 Sobic001G516901 Sobic001G516901 Sobic006G197300--Sobic001G516901 Sobic003G070900 Sobic003G070900 Sobic006G197300--Sobic003G070900 Sobic003G287900 Sobic003G287900 Sobic006G197300--Sobic003G287900 Sobic006G197300--Sobic001G436400 Sobic007G103400 Sobic007G103400 Sobic006G197300--Sobic007G103400 Sobic003G378600 Sobic003G378600 Sobic001G005200--Sobic003G378600 Sobic001G128600 Sobic001G128600 Sobic001G005200--Sobic001G128600 Sobic008G102000 Sobic008G102000 Sobic001G005200--Sobic008G102000 Sobic009G140600 Sobic009G140600 Sobic001G005200--Sobic009G140600 Sobic009G175500 Sobic009G175500 Sobic001G005200--Sobic009G175500 Sobic010G245200 Sobic010G245200 Sobic001G005200--Sobic010G245200 Sobic002G233700 Sobic002G233700 Sobic001G005200--Sobic002G233700 Sobic003G387100 Sobic003G387100 Sobic001G005200--Sobic003G387100 Sobic001G122300 Sobic001G122300 Sobic001G005200--Sobic001G122300
Octagon: transcription factors


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