Gene annotation
Transcriptome id Sobic.003G035900.1
Synonym Sb03g003210
Functional annotation expressed protein
UniProt C5XLZ8
Pfam PF02668
Panther DB PTHR10696 PTHR10696:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G21360 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g09430.1 : expressed protein
MaizeGDB (Corn) Zm00025a023058 , Zm00025a023060
Brachypodium KQK03105
Barley HORVU3Hr1G019720.3 , HORVU3Hr1G019720.2
Wheat TraesCS3A02G108700 , TraesCS3B02G127700 , TraesCS3D02G110500
Populus -


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cDNA sequences
Sobic.003G035900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190000 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.007G069000 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
3 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
4 Sobic.001G222600 cyanate hydratase, putative, expressed K01725: cyanate lyase
5 Sobic.001G057100 plant-specific domain TIGR01615 family protein, expressed -
6 Sobic.002G159100 chlorophyll A-B binding protein, putative, expressed K14172: light-harvesting complex II chlorophyll a/b binding protein 7
7 Sobic.005G004500 ferritin-1, chloroplast precursor, putative, expressed K00522: ferritin heavy chain
8 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
9 Sobic.001G446800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.001G412800 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.001G500100 dehydrogenase, putative, expressed -
12 Sobic.001G033100 expressed protein -
13 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
14 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
15 Sobic.006G091600 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
16 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
17 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
18 Sobic.006G108200 expressed protein -
19 Sobic.009G245000 Glucose-1-phosphate adenylyltransferase large subunit(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
20 Sobic.001G447600 squalene monooxygenase, putative, expressed K00511: SQLE, squalene monooxygenase


Gene co-expression network
sample Sobic003G035900 Sobic003G035900 Sobic009G190000 Sobic009G190000 Sobic003G035900--Sobic009G190000 Sobic007G069000 Sobic007G069000 Sobic003G035900--Sobic007G069000 Sobic003G373600 Sobic003G373600 Sobic003G035900--Sobic003G373600 Sobic001G222600 Sobic001G222600 Sobic003G035900--Sobic001G222600 Sobic001G057100 Sobic001G057100 Sobic003G035900--Sobic001G057100 Sobic002G159100 Sobic002G159100 Sobic003G035900--Sobic002G159100 Sobic005G004500 Sobic005G004500 Sobic003G035900--Sobic005G004500 Sobic010G047700 Sobic010G047700 Sobic003G035900--Sobic010G047700 Sobic001G446800 Sobic001G446800 Sobic003G035900--Sobic001G446800 Sobic002G279700 Sobic002G279700 Sobic009G190000--Sobic002G279700 Sobic001G033100 Sobic001G033100 Sobic009G190000--Sobic001G033100 Sobic006G013800 Sobic006G013800 Sobic009G190000--Sobic006G013800 Sobic009G190000--Sobic003G035900 Sobic003G022300 Sobic003G022300 Sobic009G190000--Sobic003G022300 Sobic005G202500 Sobic005G202500 Sobic009G190000--Sobic005G202500 Sobic008G171300 Sobic008G171300 Sobic009G190000--Sobic008G171300 Sobic009G190000--Sobic002G159100 Sobic006G261700 Sobic006G261700 Sobic009G190000--Sobic006G261700 Sobic004G338100 Sobic004G338100 Sobic007G069000--Sobic004G338100 Sobic002G225400 Sobic002G225400 Sobic007G069000--Sobic002G225400 Sobic007G108800 Sobic007G108800 Sobic007G069000--Sobic007G108800 Sobic001G500100 Sobic001G500100 Sobic007G069000--Sobic001G500100 Sobic009G245000 Sobic009G245000 Sobic007G069000--Sobic009G245000 Sobic005G038400 Sobic005G038400 Sobic007G069000--Sobic005G038400 Sobic007G069000--Sobic001G057100 Sobic007G069000--Sobic003G035900 Sobic006G084400 Sobic006G084400 Sobic007G069000--Sobic006G084400 Sobic003G157900 Sobic003G157900 Sobic003G373600--Sobic003G157900 Sobic005G062700 Sobic005G062700 Sobic003G373600--Sobic005G062700 Sobic003G425300 Sobic003G425300 Sobic003G373600--Sobic003G425300 Sobic003G381700 Sobic003G381700 Sobic003G373600--Sobic003G381700 Sobic005G172400 Sobic005G172400 Sobic003G373600--Sobic005G172400 Sobic001G276300 Sobic001G276300 Sobic003G373600--Sobic001G276300 Sobic007G079400 Sobic007G079400 Sobic003G373600--Sobic007G079400 Sobic008G077500 Sobic008G077500 Sobic003G373600--Sobic008G077500 Sobic008G187100 Sobic008G187100 Sobic003G373600--Sobic008G187100 Sobic001G222600--Sobic001G033100 Sobic001G222600--Sobic006G084400 Sobic001G222600--Sobic005G038400 Sobic005G133700 Sobic005G133700 Sobic001G222600--Sobic005G133700 Sobic001G222600--Sobic007G079400 Sobic001G173500 Sobic001G173500 Sobic001G222600--Sobic001G173500 Sobic009G155600 Sobic009G155600 Sobic001G222600--Sobic009G155600 Sobic002G200900 Sobic002G200900 Sobic001G222600--Sobic002G200900 Sobic004G020300 Sobic004G020300 Sobic001G222600--Sobic004G020300 Sobic004G097200 Sobic004G097200 Sobic001G057100--Sobic004G097200 Sobic001G057100--Sobic009G245000 Sobic009G231800 Sobic009G231800 Sobic001G057100--Sobic009G231800 Sobic003G288800 Sobic003G288800 Sobic001G057100--Sobic003G288800 Sobic005G132000 Sobic005G132000 Sobic001G057100--Sobic005G132000 Sobic009G040400 Sobic009G040400 Sobic001G057100--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic001G057100--Sobic008G002400 Sobic004G125800 Sobic004G125800 Sobic001G057100--Sobic004G125800 Sobic003G277400 Sobic003G277400 Sobic001G057100--Sobic003G277400 Sobic004G124400 Sobic004G124400 Sobic002G159100--Sobic004G124400 Sobic002G159100--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic002G159100--Sobic001G220000 Sobic006G063900 Sobic006G063900 Sobic002G159100--Sobic006G063900 Sobic006G108200 Sobic006G108200 Sobic002G159100--Sobic006G108200 Sobic001G350000 Sobic001G350000 Sobic002G159100--Sobic001G350000 Sobic001G436400 Sobic001G436400 Sobic002G159100--Sobic001G436400 Sobic006G197300 Sobic006G197300 Sobic002G159100--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic002G159100--Sobic001G005200 Sobic005G004500--Sobic002G200900 Sobic005G004500--Sobic006G108200 Sobic004G154800 Sobic004G154800 Sobic005G004500--Sobic004G154800 Sobic004G055000 Sobic004G055000 Sobic005G004500--Sobic004G055000 Sobic001G352200 Sobic001G352200 Sobic005G004500--Sobic001G352200 Sobic005G134100 Sobic005G134100 Sobic005G004500--Sobic005G134100 Sobic004G028300 Sobic004G028300 Sobic005G004500--Sobic004G028300 Sobic001G167900 Sobic001G167900 Sobic005G004500--Sobic001G167900 Sobic002G351600 Sobic002G351600 Sobic005G004500--Sobic002G351600 Sobic006G066800 Sobic006G066800 Sobic010G047700--Sobic006G066800 Sobic004G206100 Sobic004G206100 Sobic010G047700--Sobic004G206100 Sobic010G047700--Sobic006G063900 Sobic001G015200 Sobic001G015200 Sobic010G047700--Sobic001G015200 Sobic010G047700--Sobic004G028300 Sobic003G370000 Sobic003G370000 Sobic010G047700--Sobic003G370000 Sobic010G047700--Sobic001G167900 Sobic008G088821 Sobic008G088821 Sobic010G047700--Sobic008G088821 Sobic004G359600 Sobic004G359600 Sobic010G047700--Sobic004G359600 Sobic001G446800--Sobic009G190000 Sobic001G446800--Sobic003G035900 Sobic003G097500 Sobic003G097500 Sobic001G446800--Sobic003G097500 Sobic001G446800--Sobic002G159100 Sobic001G104600 Sobic001G104600 Sobic001G446800--Sobic001G104600 Sobic006G226601 Sobic006G226601 Sobic001G446800--Sobic006G226601 Sobic001G446800--Sobic001G276300 Sobic010G245200 Sobic010G245200 Sobic001G446800--Sobic010G245200 Sobic004G051100 Sobic004G051100 Sobic001G446800--Sobic004G051100
Octagon: transcription factors


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