Gene annotation
Transcriptome id Sobic.003G227900.1
Synonym Sb03g028590, CYP72A13
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cytochrome P450 72A1, putative, expressed
UniProt C5XEE0
Pfam PF00067
Panther DB PTHR24282 PTHR24282:SF42
NCBI CDD KOG0157; Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
KEGG Orthology -
Gene Ontology GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT3G14660 : cytochrome P450, family 72, subfamily A, polypeptide 13
RAP-DB (Rice) LOC_Os01g43700.1 : cytochrome P450 72A1, putative, expressed
MaizeGDB (Corn) Zm00025a038616 , Zm00025a038619 , Zm00025a018529 , Zm00025a038605 , Zm00025a028338 , Zm00025a028331 , Zm00025a028333 , Zm00025a028335 , Zm00025a028334 , Zm00025a028336 , Zm00025a010563
Brachypodium KQK14924 , PNT72427 , PNT72429 , PNT72428 , PNT72430 , KQK08823 , KQK08822 , KQK08827 , KQK08825 , KQK08824 , KQK08311
Barley HORVU2Hr1G112070.5 , HORVU2Hr1G112070.4 , HORVU2Hr1G112070.7 , HORVU2Hr1G112070.6 , HORVU2Hr1G112070.1 , HORVU2Hr1G112070.3 , HORVU2Hr1G112070.2
Wheat TraesCS2D02G505600 , TraesCS1B02G001700 , TraesCS7A02G449600 , TraesCS7B02G349100 , TraesCS2A02G504900 , TraesCS2B02G533200
Populus -


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cDNA sequences
Sobic.003G227900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
2 Sobic.005G012800 expressed protein -
3 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
4 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
5 Sobic.004G296300 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
6 Sobic.006G236600 bHLH family protein, putative, expressed -
7 Sobic.008G072600 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
8 Sobic.009G251100 TTL1, putative, expressed K09527: DnaJ homolog subfamily C member 7
9 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
10 Sobic.002G357400 transcription repressor HOTR, putative, expressed -
11 Sobic.009G126700 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
12 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
14 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
15 Sobic.008G091557 - -
16 Sobic.003G182400 DNA-damage-repair/toleration protein DRT102, putative, expressed -
17 Sobic.010G120300 tm-1GCR237 protein, putative, expressed -
18 Sobic.005G057301 - -
19 Sobic.001G108700 SEC14 cytosolic factor family protein, putative, expressed -
20 Sobic.002G383900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase


Gene co-expression network
sample Sobic003G227900 Sobic003G227900 Sobic005G115600 Sobic005G115600 Sobic003G227900--Sobic005G115600 Sobic005G012800 Sobic005G012800 Sobic003G227900--Sobic005G012800 Sobic006G256200 Sobic006G256200 Sobic003G227900--Sobic006G256200 Sobic009G017500 Sobic009G017500 Sobic003G227900--Sobic009G017500 Sobic004G296300 Sobic004G296300 Sobic003G227900--Sobic004G296300 Sobic006G236600 Sobic006G236600 Sobic003G227900--Sobic006G236600 Sobic008G072600 Sobic008G072600 Sobic003G227900--Sobic008G072600 Sobic009G251100 Sobic009G251100 Sobic003G227900--Sobic009G251100 Sobic001G073150 Sobic001G073150 Sobic003G227900--Sobic001G073150 Sobic006G030800 Sobic006G030800 Sobic005G115600--Sobic006G030800 Sobic005G115600--Sobic009G017500 Sobic003G279800 Sobic003G279800 Sobic005G115600--Sobic003G279800 Sobic002G383900 Sobic002G383900 Sobic005G115600--Sobic002G383900 Sobic003G157700 Sobic003G157700 Sobic005G115600--Sobic003G157700 Sobic002G083600 Sobic002G083600 Sobic005G115600--Sobic002G083600 Sobic005G115600--Sobic006G256200 Sobic003G258800 Sobic003G258800 Sobic005G115600--Sobic003G258800 Sobic003G105000 Sobic003G105000 Sobic005G115600--Sobic003G105000 Sobic005G071800 Sobic005G071800 Sobic005G012800--Sobic005G071800 Sobic002G145300 Sobic002G145300 Sobic005G012800--Sobic002G145300 Sobic005G012800--Sobic002G083600 Sobic005G012800--Sobic001G073150 Sobic005G093500 Sobic005G093500 Sobic005G012800--Sobic005G093500 Sobic005G012800--Sobic004G296300 Sobic005G012800--Sobic009G251100 Sobic001G029800 Sobic001G029800 Sobic005G012800--Sobic001G029800 Sobic001G368100 Sobic001G368100 Sobic005G012800--Sobic001G368100 Sobic006G256200--Sobic008G072600 Sobic009G221900 Sobic009G221900 Sobic006G256200--Sobic009G221900 Sobic008G091557 Sobic008G091557 Sobic006G256200--Sobic008G091557 Sobic006G256200--Sobic009G017500 Sobic006G249400 Sobic006G249400 Sobic006G256200--Sobic006G249400 Sobic006G256200--Sobic002G083600 Sobic001G208600 Sobic001G208600 Sobic006G256200--Sobic001G208600 Sobic006G256200--Sobic005G071800 Sobic006G256200--Sobic005G115600 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G017500--Sobic009G221900 Sobic002G030800 Sobic002G030800 Sobic009G017500--Sobic002G030800 Sobic009G017500--Sobic008G072600 Sobic010G096100 Sobic010G096100 Sobic009G017500--Sobic010G096100 Sobic006G075000 Sobic006G075000 Sobic009G017500--Sobic006G075000 Sobic003G099166 Sobic003G099166 Sobic009G017500--Sobic003G099166 Sobic003G238600 Sobic003G238600 Sobic009G017500--Sobic003G238600 Sobic004G296300--Sobic009G251100 Sobic007G130900 Sobic007G130900 Sobic004G296300--Sobic007G130900 Sobic001G196000 Sobic001G196000 Sobic004G296300--Sobic001G196000 Sobic007G139500 Sobic007G139500 Sobic004G296300--Sobic007G139500 Sobic004G296300--Sobic010G096100 Sobic003G017500 Sobic003G017500 Sobic004G296300--Sobic003G017500 Sobic008G174900 Sobic008G174900 Sobic004G296300--Sobic008G174900 Sobic010G120300 Sobic010G120300 Sobic004G296300--Sobic010G120300 Sobic007G079600 Sobic007G079600 Sobic004G296300--Sobic007G079600 Sobic008G158900 Sobic008G158900 Sobic006G236600--Sobic008G158900 Sobic002G194600 Sobic002G194600 Sobic006G236600--Sobic002G194600 Sobic009G058400 Sobic009G058400 Sobic006G236600--Sobic009G058400 Sobic010G155800 Sobic010G155800 Sobic006G236600--Sobic010G155800 Sobic005G219700 Sobic005G219700 Sobic006G236600--Sobic005G219700 Sobic006G236600--Sobic004G296300 Sobic003G082700 Sobic003G082700 Sobic006G236600--Sobic003G082700 Sobic008G055800 Sobic008G055800 Sobic006G236600--Sobic008G055800 Sobic002G076700 Sobic002G076700 Sobic006G236600--Sobic002G076700 Sobic008G072600--Sobic006G256200 Sobic008G072600--Sobic009G017500 Sobic008G072600--Sobic008G091557 Sobic008G072600--Sobic009G221900 Sobic009G063400 Sobic009G063400 Sobic008G072600--Sobic009G063400 Sobic005G107500 Sobic005G107500 Sobic008G072600--Sobic005G107500 Sobic007G038600 Sobic007G038600 Sobic008G072600--Sobic007G038600 Sobic008G072600--Sobic001G263900 Sobic008G072600--Sobic010G096100 Sobic009G251100--Sobic004G296300 Sobic009G251100--Sobic010G120300 Sobic009G251100--Sobic010G096100 Sobic003G419600 Sobic003G419600 Sobic009G251100--Sobic003G419600 Sobic009G251100--Sobic001G196000 Sobic009G251100--Sobic001G073150 Sobic004G243800 Sobic004G243800 Sobic009G251100--Sobic004G243800 Sobic001G437500 Sobic001G437500 Sobic009G251100--Sobic001G437500 Sobic009G251100--Sobic009G063400 Sobic001G073150--Sobic010G120300 Sobic010G090500 Sobic010G090500 Sobic001G073150--Sobic010G090500 Sobic003G198500 Sobic003G198500 Sobic001G073150--Sobic003G198500 Sobic008G191500 Sobic008G191500 Sobic001G073150--Sobic008G191500 Sobic001G073150--Sobic010G096100 Sobic009G125900 Sobic009G125900 Sobic001G073150--Sobic009G125900 Sobic001G073150--Sobic009G251100 Sobic001G159800 Sobic001G159800 Sobic001G073150--Sobic001G159800 Sobic001G073150--Sobic008G174900
Octagon: transcription factors


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