Gene annotation
Transcriptome id Sobic.004G296300.1
Synonym Sb04g033020, CAT9
Functional annotation amino acid permease, putative, expressed
UniProt C5XRZ2
Pfam PF13906
Panther DB PTHR11785 PTHR11785:SF407
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K03294; basic amino acid/polyamine antiporter, APA family
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G05940 : cationic amino acid transporter 9
RAP-DB (Rice) LOC_Os02g43860.1 : amino acid permease, putative, expressed
MaizeGDB (Corn) Zm00025a020888
Brachypodium KQK00595
Barley HORVU6Hr1G062860.1 , HORVU0Hr1G023140.1 , HORVU0Hr1G023140.2
Wheat TraesCS6B02G280000 , TraesCS6A02G244400 , TraesCS6D02G226700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G251100 TTL1, putative, expressed K09527: DnaJ homolog subfamily C member 7
2 Sobic.007G130900 expressed protein -
3 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
4 Sobic.007G139500 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
5 Sobic.010G096100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
6 Sobic.003G017500 TTL1, putative, expressed -
7 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.010G120300 tm-1GCR237 protein, putative, expressed -
9 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
10 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
11 Sobic.004G243800 HEAT repeat family protein, putative, expressed -
12 Sobic.006G236600 bHLH family protein, putative, expressed -
13 Sobic.003G419600 disease resistance protein RGA2, putative, expressed -
14 Sobic.005G012800 expressed protein -
15 Sobic.003G243500 AP2 domain containing protein, expressed -
16 Sobic.003G259500 - -
17 Sobic.001G334900 X8 domain containing protein, expressed -
18 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -
19 Sobic.004G253500 auxin-independent growth promoter protein, putative, expressed -
20 Sobic.001G159800 KIP1, putative, expressed -


Gene co-expression network
sample Sobic004G296300 Sobic004G296300 Sobic009G251100 Sobic009G251100 Sobic004G296300--Sobic009G251100 Sobic007G130900 Sobic007G130900 Sobic004G296300--Sobic007G130900 Sobic001G196000 Sobic001G196000 Sobic004G296300--Sobic001G196000 Sobic007G139500 Sobic007G139500 Sobic004G296300--Sobic007G139500 Sobic010G096100 Sobic010G096100 Sobic004G296300--Sobic010G096100 Sobic003G017500 Sobic003G017500 Sobic004G296300--Sobic003G017500 Sobic008G174900 Sobic008G174900 Sobic004G296300--Sobic008G174900 Sobic010G120300 Sobic010G120300 Sobic004G296300--Sobic010G120300 Sobic007G079600 Sobic007G079600 Sobic004G296300--Sobic007G079600 Sobic009G251100--Sobic004G296300 Sobic009G251100--Sobic010G120300 Sobic009G251100--Sobic010G096100 Sobic003G419600 Sobic003G419600 Sobic009G251100--Sobic003G419600 Sobic009G251100--Sobic001G196000 Sobic001G073150 Sobic001G073150 Sobic009G251100--Sobic001G073150 Sobic004G243800 Sobic004G243800 Sobic009G251100--Sobic004G243800 Sobic001G437500 Sobic001G437500 Sobic009G251100--Sobic001G437500 Sobic009G063400 Sobic009G063400 Sobic009G251100--Sobic009G063400 Sobic007G130900--Sobic003G017500 Sobic005G110600 Sobic005G110600 Sobic007G130900--Sobic005G110600 Sobic006G245600 Sobic006G245600 Sobic007G130900--Sobic006G245600 Sobic004G156900 Sobic004G156900 Sobic007G130900--Sobic004G156900 Sobic003G420100 Sobic003G420100 Sobic007G130900--Sobic003G420100 Sobic006G054600 Sobic006G054600 Sobic007G130900--Sobic006G054600 Sobic002G016400 Sobic002G016400 Sobic007G130900--Sobic002G016400 Sobic003G277200 Sobic003G277200 Sobic007G130900--Sobic003G277200 Sobic008G039800 Sobic008G039800 Sobic007G130900--Sobic008G039800 Sobic001G196000--Sobic001G437500 Sobic001G196000--Sobic007G139500 Sobic001G196000--Sobic004G243800 Sobic009G206500 Sobic009G206500 Sobic001G196000--Sobic009G206500 Sobic004G274800 Sobic004G274800 Sobic001G196000--Sobic004G274800 Sobic006G081000 Sobic006G081000 Sobic001G196000--Sobic006G081000 Sobic007G173000 Sobic007G173000 Sobic001G196000--Sobic007G173000 Sobic008G174966 Sobic008G174966 Sobic001G196000--Sobic008G174966 Sobic001G159800 Sobic001G159800 Sobic001G196000--Sobic001G159800 Sobic007G139500--Sobic001G196000 Sobic001G051300 Sobic001G051300 Sobic007G139500--Sobic001G051300 Sobic007G139500--Sobic009G206500 Sobic007G139500--Sobic001G437500 Sobic003G179500 Sobic003G179500 Sobic007G139500--Sobic003G179500 Sobic001G103000 Sobic001G103000 Sobic007G139500--Sobic001G103000 Sobic007G139500--Sobic003G017500 Sobic002G191000 Sobic002G191000 Sobic007G139500--Sobic002G191000 Sobic009G214100 Sobic009G214100 Sobic007G139500--Sobic009G214100 Sobic006G075000 Sobic006G075000 Sobic010G096100--Sobic006G075000 Sobic001G208600 Sobic001G208600 Sobic010G096100--Sobic001G208600 Sobic010G096100--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic010G096100--Sobic009G026101 Sobic009G125900 Sobic009G125900 Sobic010G096100--Sobic009G125900 Sobic009G017500 Sobic009G017500 Sobic010G096100--Sobic009G017500 Sobic010G096100--Sobic009G251100 Sobic001G484000 Sobic001G484000 Sobic010G096100--Sobic001G484000 Sobic010G114000 Sobic010G114000 Sobic010G096100--Sobic010G114000 Sobic002G383100 Sobic002G383100 Sobic003G017500--Sobic002G383100 Sobic003G017500--Sobic001G051300 Sobic003G017500--Sobic007G130900 Sobic003G017500--Sobic001G437500 Sobic003G017500--Sobic007G139500 Sobic009G073400 Sobic009G073400 Sobic003G017500--Sobic009G073400 Sobic003G017500--Sobic009G206500 Sobic003G017500--Sobic001G159800 Sobic003G410600 Sobic003G410600 Sobic003G017500--Sobic003G410600 Sobic002G276600 Sobic002G276600 Sobic008G174900--Sobic002G276600 Sobic008G174900--Sobic001G437500 Sobic008G174900--Sobic004G243800 Sobic006G267500 Sobic006G267500 Sobic008G174900--Sobic006G267500 Sobic010G090500 Sobic010G090500 Sobic008G174900--Sobic010G090500 Sobic008G174900--Sobic009G026101 Sobic009G226900 Sobic009G226900 Sobic008G174900--Sobic009G226900 Sobic008G174900--Sobic010G096100 Sobic008G174900--Sobic009G206500 Sobic010G120300--Sobic001G073150 Sobic010G120300--Sobic010G090500 Sobic010G120300--Sobic009G251100 Sobic010G120300--Sobic001G159800 Sobic010G120300--Sobic008G174900 Sobic001G131700 Sobic001G131700 Sobic010G120300--Sobic001G131700 Sobic003G267000 Sobic003G267000 Sobic010G120300--Sobic003G267000 Sobic010G120300--Sobic009G125900 Sobic001G021500 Sobic001G021500 Sobic010G120300--Sobic001G021500 Sobic004G355500 Sobic004G355500 Sobic007G079600--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G079600--Sobic010G103700 Sobic009G088200 Sobic009G088200 Sobic007G079600--Sobic009G088200 Sobic007G112100 Sobic007G112100 Sobic007G079600--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic007G079600--Sobic006G051000 Sobic007G079600--Sobic003G179500 Sobic007G079600--Sobic001G103000 Sobic003G183700 Sobic003G183700 Sobic007G079600--Sobic003G183700 Sobic007G079600--Sobic007G139500
Octagon: transcription factors


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