Gene annotation
Transcriptome id Sobic.003G259500.1
Synonym
Functional annotation -
UniProt A0A1B6Q5D6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G253500 auxin-independent growth promoter protein, putative, expressed -
2 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
3 Sobic.003G078300 leucine-rich repeat protein-related, putative, expressed -
4 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
5 Sobic.009G002900 expressed protein -
6 Sobic.007G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FabA-like domain containing protein, expressed K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
7 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
8 Sobic.001G461800 zinc finger family protein, putative, expressed -
9 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
10 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
11 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.003G102700 exostosin family protein, putative, expressed -
13 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
14 Sobic.001G379100 basic helix-loop-helix domain containing protein, expressed -
15 Sobic.004G222300 DEF7 - Defensin and Defensin-like DEFL family, expressed -
16 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
17 Sobic.003G376600 plant-specific domain TIGR01615 family protein, expressed -
18 Sobic.004G296300 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
19 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.007G166600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family


Gene co-expression network
sample Sobic003G259500 Sobic003G259500 Sobic004G253500 Sobic004G253500 Sobic003G259500--Sobic004G253500 Sobic003G250000 Sobic003G250000 Sobic003G259500--Sobic003G250000 Sobic003G078300 Sobic003G078300 Sobic003G259500--Sobic003G078300 Sobic003G333700 Sobic003G333700 Sobic003G259500--Sobic003G333700 Sobic009G002900 Sobic009G002900 Sobic003G259500--Sobic009G002900 Sobic007G079600 Sobic007G079600 Sobic003G259500--Sobic007G079600 Sobic003G148400 Sobic003G148400 Sobic003G259500--Sobic003G148400 Sobic001G461800 Sobic001G461800 Sobic003G259500--Sobic001G461800 Sobic002G078000 Sobic002G078000 Sobic003G259500--Sobic002G078000 Sobic004G253500--Sobic003G078300 Sobic004G253500--Sobic001G461800 Sobic004G253500--Sobic003G250000 Sobic004G253500--Sobic003G259500 Sobic008G059900 Sobic008G059900 Sobic004G253500--Sobic008G059900 Sobic003G024000 Sobic003G024000 Sobic004G253500--Sobic003G024000 Sobic004G253500--Sobic009G002900 Sobic001G199500 Sobic001G199500 Sobic004G253500--Sobic001G199500 Sobic003G102700 Sobic003G102700 Sobic004G253500--Sobic003G102700 Sobic003G250000--Sobic001G461800 Sobic003G250000--Sobic004G253500 Sobic004G269100 Sobic004G269100 Sobic003G250000--Sobic004G269100 Sobic003G250000--Sobic003G078300 Sobic003G250000--Sobic009G002900 Sobic003G291000 Sobic003G291000 Sobic003G250000--Sobic003G291000 Sobic002G286700 Sobic002G286700 Sobic003G250000--Sobic002G286700 Sobic003G250000--Sobic003G259500 Sobic002G259200 Sobic002G259200 Sobic003G250000--Sobic002G259200 Sobic002G311000 Sobic002G311000 Sobic003G078300--Sobic002G311000 Sobic003G078300--Sobic004G253500 Sobic003G078300--Sobic001G461800 Sobic001G389600 Sobic001G389600 Sobic003G078300--Sobic001G389600 Sobic006G257200 Sobic006G257200 Sobic003G078300--Sobic006G257200 Sobic003G078300--Sobic003G291000 Sobic002G045200 Sobic002G045200 Sobic003G078300--Sobic002G045200 Sobic003G078300--Sobic003G250000 Sobic002G362700 Sobic002G362700 Sobic003G078300--Sobic002G362700 Sobic003G333700--Sobic002G078000 Sobic003G223000 Sobic003G223000 Sobic003G333700--Sobic003G223000 Sobic001G013900 Sobic001G013900 Sobic003G333700--Sobic001G013900 Sobic001G104300 Sobic001G104300 Sobic003G333700--Sobic001G104300 Sobic004G109000 Sobic004G109000 Sobic003G333700--Sobic004G109000 Sobic001G164500 Sobic001G164500 Sobic003G333700--Sobic001G164500 Sobic001G165801 Sobic001G165801 Sobic003G333700--Sobic001G165801 Sobic001G188600 Sobic001G188600 Sobic003G333700--Sobic001G188600 Sobic001G379100 Sobic001G379100 Sobic003G333700--Sobic001G379100 Sobic009G002900--Sobic003G250000 Sobic009G002900--Sobic003G078300 Sobic009G002900--Sobic004G253500 Sobic009G177200 Sobic009G177200 Sobic009G002900--Sobic009G177200 Sobic009G002900--Sobic003G223000 Sobic009G002900--Sobic001G461800 Sobic008G113300 Sobic008G113300 Sobic009G002900--Sobic008G113300 Sobic006G093200 Sobic006G093200 Sobic009G002900--Sobic006G093200 Sobic009G002900--Sobic001G199500 Sobic004G355500 Sobic004G355500 Sobic007G079600--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G079600--Sobic010G103700 Sobic009G088200 Sobic009G088200 Sobic007G079600--Sobic009G088200 Sobic007G112100 Sobic007G112100 Sobic007G079600--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic007G079600--Sobic006G051000 Sobic003G179500 Sobic003G179500 Sobic007G079600--Sobic003G179500 Sobic001G103000 Sobic001G103000 Sobic007G079600--Sobic001G103000 Sobic003G183700 Sobic003G183700 Sobic007G079600--Sobic003G183700 Sobic007G139500 Sobic007G139500 Sobic007G079600--Sobic007G139500 Sobic003G148400--Sobic001G379100 Sobic003G148400--Sobic003G250000 Sobic003G148400--Sobic004G253500 Sobic003G148400--Sobic001G164500 Sobic010G096200 Sobic010G096200 Sobic003G148400--Sobic010G096200 Sobic002G225000 Sobic002G225000 Sobic003G148400--Sobic002G225000 Sobic003G148400--Sobic003G259500 Sobic003G148400--Sobic009G002900 Sobic008G075200 Sobic008G075200 Sobic003G148400--Sobic008G075200 Sobic001G461800--Sobic003G250000 Sobic004G164700 Sobic004G164700 Sobic001G461800--Sobic004G164700 Sobic001G461800--Sobic003G291000 Sobic001G461800--Sobic002G286700 Sobic008G190000 Sobic008G190000 Sobic001G461800--Sobic008G190000 Sobic001G461800--Sobic003G078300 Sobic001G461800--Sobic004G253500 Sobic001G381100 Sobic001G381100 Sobic001G461800--Sobic001G381100 Sobic006G241800 Sobic006G241800 Sobic001G461800--Sobic006G241800 Sobic002G078000--Sobic001G013900 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic002G078000--Sobic005G022000 Sobic002G078000--Sobic003G223000 Sobic002G360200 Sobic002G360200 Sobic002G078000--Sobic002G360200 Sobic002G078000--Sobic001G188600 Sobic010G012900 Sobic010G012900 Sobic002G078000--Sobic010G012900 Sobic002G078000--Sobic004G109000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.