Gene annotation
Transcriptome id Sobic.009G126700.2,Sobic.009G126700.1
Synonym chr31, Sb09g019410
Functional annotation expressed protein
UniProt A0A1Z5R2E6 , A0A1Z5R2E8
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF43
NCBI CDD KOG0390; DNA repair protein, SNF2 family
KEGG Orthology K10875; RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G05490 : chromatin remodeling 31
RAP-DB (Rice) LOC_Os05g32610.1 : required to maintain repression 1, putative, expressed
MaizeGDB (Corn) Zm00025a043589
Brachypodium PNT71350 , PNT71351 , PNT71349
Barley HORVU1Hr1G062970.3 , HORVU1Hr1G062970.2 , HORVU1Hr1G062970.1 , HORVU1Hr1G062970.7 , HORVU1Hr1G062970.6 , HORVU1Hr1G062970.5 , HORVU1Hr1G062970.4 , HORVU1Hr1G062970.9 , HORVU1Hr1G062970.8 , HORVU1Hr1G062970.22 , HORVU1Hr1G062970.23 , HORVU1Hr1G062970.20 , HORVU1Hr1G062970.21 , HORVU1Hr1G062970.24 , HORVU1Hr1G062970.25 , HORVU1Hr1G062970.13 , HORVU1Hr1G062970.12 , HORVU1Hr1G062970.11 , HORVU1Hr1G062970.10 , HORVU1Hr1G062970.17 , HORVU1Hr1G062970.16 , HORVU1Hr1G062970.15 , HORVU1Hr1G062970.14 , HORVU1Hr1G062970.19 , HORVU1Hr1G062970.18
Wheat TraesCS1D02G245400 , TraesCS1A02G245700 , TraesCS1B02G256700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
2 Sobic.002G009300 expressed protein K01427: urease
3 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
4 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
5 Sobic.006G128400 PPR repeat containing protein, expressed -
6 Sobic.002G092050 - -
7 Sobic.009G033100 OsWAK4 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
8 Sobic.003G017400 phosphoacetylglucosamine mutase, putative, expressed K01836: phosphoacetylglucosamine mutase
9 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
10 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
11 Sobic.004G027300 expressed protein -
12 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
13 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
14 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
15 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II
16 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
17 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
18 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
19 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
20 Sobic.002G206500 queuine tRNA-ribosyltransferase, putative, expressed K00773: tgt, queuine tRNA-ribosyltransferase


Gene co-expression network
sample Sobic009G126700 Sobic009G126700 Sobic001G224200 Sobic001G224200 Sobic009G126700--Sobic001G224200 Sobic002G009300 Sobic002G009300 Sobic009G126700--Sobic002G009300 Sobic002G378100 Sobic002G378100 Sobic009G126700--Sobic002G378100 Sobic008G022701 Sobic008G022701 Sobic009G126700--Sobic008G022701 Sobic006G128400 Sobic006G128400 Sobic009G126700--Sobic006G128400 Sobic002G092050 Sobic002G092050 Sobic009G126700--Sobic002G092050 Sobic009G033100 Sobic009G033100 Sobic009G126700--Sobic009G033100 Sobic003G017400 Sobic003G017400 Sobic009G126700--Sobic003G017400 Sobic005G100900 Sobic005G100900 Sobic009G126700--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic001G224200--Sobic008G165900 Sobic001G224200--Sobic006G128400 Sobic001G207200 Sobic001G207200 Sobic001G224200--Sobic001G207200 Sobic007G075800 Sobic007G075800 Sobic001G224200--Sobic007G075800 Sobic002G238000 Sobic002G238000 Sobic001G224200--Sobic002G238000 Sobic001G119600 Sobic001G119600 Sobic001G224200--Sobic001G119600 Sobic003G332900 Sobic003G332900 Sobic001G224200--Sobic003G332900 Sobic001G501400 Sobic001G501400 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic008G088851 Sobic008G088851 Sobic002G009300--Sobic008G088851 Sobic008G088857 Sobic008G088857 Sobic002G009300--Sobic008G088857 Sobic009G139900 Sobic009G139900 Sobic002G009300--Sobic009G139900 Sobic007G092600 Sobic007G092600 Sobic002G009300--Sobic007G092600 Sobic002G308500 Sobic002G308500 Sobic002G009300--Sobic002G308500 Sobic010G188000 Sobic010G188000 Sobic002G009300--Sobic010G188000 Sobic004G290000 Sobic004G290000 Sobic002G009300--Sobic004G290000 Sobic003G235000 Sobic003G235000 Sobic002G009300--Sobic003G235000 Sobic003G445000 Sobic003G445000 Sobic002G009300--Sobic003G445000 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic007G145100 Sobic007G145100 Sobic008G022701--Sobic007G145100 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic008G022701--Sobic004G027300 Sobic006G128400--Sobic002G378100 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic002G092050--Sobic002G378100 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic006G125900 Sobic006G125900 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic002G092050--Sobic001G501400 Sobic002G092050--Sobic002G238000 Sobic006G000600 Sobic006G000600 Sobic009G033100--Sobic006G000600 Sobic005G110541 Sobic005G110541 Sobic009G033100--Sobic005G110541 Sobic006G000700 Sobic006G000700 Sobic009G033100--Sobic006G000700 Sobic010G123400 Sobic010G123400 Sobic009G033100--Sobic010G123400 Sobic002G301500 Sobic002G301500 Sobic009G033100--Sobic002G301500 Sobic004G161900 Sobic004G161900 Sobic009G033100--Sobic004G161900 Sobic003G192600 Sobic003G192600 Sobic009G033100--Sobic003G192600 Sobic009G033100--Sobic003G017400 Sobic002G120300 Sobic002G120300 Sobic009G033100--Sobic002G120300 Sobic006G219300 Sobic006G219300 Sobic003G017400--Sobic006G219300 Sobic003G017400--Sobic004G290000 Sobic008G004300 Sobic008G004300 Sobic003G017400--Sobic008G004300 Sobic003G017400--Sobic009G033100 Sobic003G017400--Sobic007G092600 Sobic003G017400--Sobic009G126700 Sobic003G017400--Sobic003G445000 Sobic003G017400--Sobic010G123400 Sobic003G017400--Sobic002G009300 Sobic005G100900--Sobic002G238000 Sobic009G071700 Sobic009G071700 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic005G100900--Sobic001G119600 Sobic002G262100 Sobic002G262100 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic005G100900--Sobic008G165900
Octagon: transcription factors


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