Gene annotation
Transcriptome id Sobic.005G089900.3
Synonym Sb05g007370
Functional annotation dynein light chain type 1 domain containing protein, expressed
UniProt A0A1Z5RHH6
Pfam PF01221
Panther DB PTHR11886
NCBI CDD -
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT4G15930 : Dynein light chain type 1 family protein
RAP-DB (Rice) LOC_Os01g15260.1 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023955 , Zm00025a035328
Brachypodium -
Barley -
Wheat TraesCS3A02G175300 , TraesCS3B02G205000 , TraesCS3D02G180700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G351300 - -
2 Sobic.001G262000 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.008G161601 - -
4 Sobic.006G133000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
5 Sobic.003G331700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thaumatin, putative, expressed -
6 Sobic.006G132300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
7 Sobic.001G369300 cytochrome P450, putative, expressed -
8 Sobic.009G024700 MYB family transcription factor, putative, expressed -
9 Sobic.006G054400 expressed protein -
10 Sobic.007G075351 - -
11 Sobic.001G381250 - -
12 Sobic.001G381250 - -
13 Sobic.001G381250 - -
14 Sobic.001G381250 - -
15 Sobic.001G381250 - -
16 Sobic.001G381250 - -
17 Sobic.001G381250 - -
18 Sobic.001G381250 - -
19 Sobic.001G381250 - -
20 Sobic.001G381250 - -


Gene co-expression network
sample Sobic005G089900 Sobic005G089900 Sobic001G351300 Sobic001G351300 Sobic005G089900--Sobic001G351300 Sobic001G262000 Sobic001G262000 Sobic005G089900--Sobic001G262000 Sobic008G161601 Sobic008G161601 Sobic005G089900--Sobic008G161601 Sobic006G133000 Sobic006G133000 Sobic005G089900--Sobic006G133000 Sobic003G331700 Sobic003G331700 Sobic005G089900--Sobic003G331700 Sobic006G132300 Sobic006G132300 Sobic005G089900--Sobic006G132300 Sobic001G369300 Sobic001G369300 Sobic005G089900--Sobic001G369300 Sobic009G024700 Sobic009G024700 Sobic005G089900--Sobic009G024700 Sobic006G054400 Sobic006G054400 Sobic005G089900--Sobic006G054400 Sobic001G351300--Sobic001G262000 Sobic001G351300--Sobic001G369300 Sobic009G041100 Sobic009G041100 Sobic001G351300--Sobic009G041100 Sobic001G381250 Sobic001G381250 Sobic001G351300--Sobic001G381250 Sobic001G262000--Sobic001G351300 Sobic001G262000--Sobic001G369300 Sobic001G262000--Sobic009G041100 Sobic001G262000--Sobic001G381250 Sobic008G161601--Sobic006G132300 Sobic001G413850 Sobic001G413850 Sobic008G161601--Sobic001G413850 Sobic008G186700 Sobic008G186700 Sobic008G161601--Sobic008G186700 Sobic008G161601--Sobic001G381250 Sobic002G021132 Sobic002G021132 Sobic006G133000--Sobic002G021132 Sobic006G133000--Sobic009G041100 Sobic009G169650 Sobic009G169650 Sobic006G133000--Sobic009G169650 Sobic006G151001 Sobic006G151001 Sobic006G133000--Sobic006G151001 Sobic006G133000--Sobic008G161601 Sobic006G133000--Sobic003G331700 Sobic006G096200 Sobic006G096200 Sobic006G133000--Sobic006G096200 Sobic008G037000 Sobic008G037000 Sobic006G133000--Sobic008G037000 Sobic006G133000--Sobic006G132300 Sobic004G270350 Sobic004G270350 Sobic003G331700--Sobic004G270350 Sobic003G331700--Sobic006G132300 Sobic003G242200 Sobic003G242200 Sobic003G331700--Sobic003G242200 Sobic005G087666 Sobic005G087666 Sobic003G331700--Sobic005G087666 Sobic007G036600 Sobic007G036600 Sobic003G331700--Sobic007G036600 Sobic002G362400 Sobic002G362400 Sobic003G331700--Sobic002G362400 Sobic010G044600 Sobic010G044600 Sobic003G331700--Sobic010G044600 Sobic010G237100 Sobic010G237100 Sobic003G331700--Sobic010G237100 Sobic007G029800 Sobic007G029800 Sobic003G331700--Sobic007G029800 Sobic005G169300 Sobic005G169300 Sobic006G132300--Sobic005G169300 Sobic006G132300--Sobic001G381250 Sobic010G049800 Sobic010G049800 Sobic001G369300--Sobic010G049800 Sobic006G064400 Sobic006G064400 Sobic001G369300--Sobic006G064400 Sobic001G369300--Sobic001G351300 Sobic001G369300--Sobic004G270350 Sobic001G369300--Sobic001G381250 Sobic009G024700--Sobic001G381250 Sobic006G054400--Sobic008G161601 Sobic009G231500 Sobic009G231500 Sobic006G054400--Sobic009G231500 Sobic006G054400--Sobic006G132300 Sobic002G370300 Sobic002G370300 Sobic006G054400--Sobic002G370300 Sobic003G101100 Sobic003G101100 Sobic006G054400--Sobic003G101100 Sobic001G203100 Sobic001G203100 Sobic006G054400--Sobic001G203100 Sobic008G087100 Sobic008G087100 Sobic006G054400--Sobic008G087100 Sobic006G054400--Sobic010G044600 Sobic006G054400--Sobic010G237100
Octagon: transcription factors


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