Gene annotation
| Transcriptome id |
Sobic.005G125400.1 |
|---|
| Synonym |
Sb05g018580, SLAH3 |
|---|
| Functional annotation |
C4-dicarboxylate transporter/malic acid transport protein, expressed |
|---|
| UniProt |
A0A1B6PS10 |
|---|
| Pfam |
PF03595 |
|---|
| Panther DB |
PTHR31269
PTHR31269:SF10 |
|---|
| NCBI CDD |
- |
|---|
| KEGG Orthology |
- |
|---|
| Gene Ontology |
GO:0016021; integral component of membrane
GO:0008308voltage-gated anion channel activity
GO:0006873cellular ion homeostasis |
|---|
Orthologs (automatic annotation)
| TAIR |
AT5G24030 : SLAC1 homologue 3 |
|---|
| RAP-DB (Rice) |
LOC_Os01g28840.1 : C4-dicarboxylate transporter/malic acid transport protein, expressed |
|---|
| MaizeGDB (Corn) |
Zm00025a043265
, Zm00025a044733
, Zm00025a022844
, Zm00025a037581
, Zm00025a036732
, Zm00025a038583
, Zm00025a025514
, Zm00025a028368 |
|---|
| Brachypodium |
KQK07006
, KQK07007
, KQK07008
, KQK07009
, KQK08799
, KQK03387
, KQK08801
, KQK08800
, PNT72420 |
|---|
| Barley |
HORVU3Hr1G030850.1
, HORVU3Hr1G030850.3
, HORVU3Hr1G030850.2
, HORVU3Hr1G055740.4
, HORVU3Hr1G055740.5
, HORVU3Hr1G055740.6
, HORVU3Hr1G055740.7
, HORVU3Hr1G055740.1
, HORVU3Hr1G055740.2
, HORVU3Hr1G055740.3
, HORVU3Hr1G055740.8
, HORVU3Hr1G055740.9
, HORVU3Hr1G030840.2
, HORVU3Hr1G030840.3
, HORVU3Hr1G030840.1
, HORVU1Hr1G030060.10
, HORVU1Hr1G030060.11
, HORVU1Hr1G030060.12
, HORVU1Hr1G030060.13
, HORVU3Hr1G055740.14
, HORVU3Hr1G055740.15
, HORVU3Hr1G055740.12
, HORVU3Hr1G055740.13
, HORVU3Hr1G055740.10
, HORVU3Hr1G055740.11
, HORVU1Hr1G030060.8
, HORVU1Hr1G030060.9
, HORVU1Hr1G030060.2
, HORVU1Hr1G030060.6
, HORVU1Hr1G030060.4 |
|---|
| Wheat |
TraesCS3B02G178600
, TraesCS1D02G126500
, TraesCS1A02G127500
, TraesCS3D02G159600
, TraesCS3D02G228400
, TraesCS3A02G151400
, TraesCS3A02G225100
, TraesCS3B02G254700 |
|---|
| Populus |
- |
|---|
JBrowse
Expression pattern by RNA-Seq analysis
| FPKM plot |
 |
Find similar expressed genes
| Top 20 genes with similar expressed profiles |
 |
| Rank |
Gene |
Function |
KEGG orthology |
|---|
| 1 |
Sobic.001G355300 |
aldose 1-epimerase, putative, expressed |
K01785: galM, aldose 1-epimerase |
| 2 |
Sobic.007G219300 |
BURP domain containing protein, expressed |
- |
| 3 |
Sobic.003G180700 |
major facilitator superfamily antiporter, putative, expressed |
- |
| 4 |
Sobic.002G298500 |
LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
- |
| 5 |
Sobic.009G067100 |
cytochrome P450, putative, expressed |
- |
| 6 |
Sobic.007G083500 |
speckle-type POZ protein, putative, expressed |
K10523: speckle-type POZ protein |
| 7 |
Sobic.006G018000 |
expressed protein |
- |
| 8 |
Sobic.001G092650 |
- |
- |
| 9 |
Sobic.003G164300 |
cullin, putative, expressed |
K03347: CUL1, cullin 1 |
| 10 |
Sobic.003G354850 |
- |
- |
| 11 |
Sobic.005G212300 |
MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
K10523: speckle-type POZ protein |
| 12 |
Sobic.002G100300 |
OsFBD15 - F-box and FBD domain containing protein, expressed |
- |
| 13 |
Sobic.003G090200 |
seven in absentia protein family domain containing protein, expressed |
- |
| 14 |
Sobic.010G043300 |
expressed protein |
- |
| 15 |
Sobic.006G124500 |
Regulator of chromosome condensation domain containing protein, expressed |
- |
| 16 |
Sobic.002G123400 |
OsRR7 type-A response regulator, expressed |
K14492: two-component response regulator ARR-A family |
| 17 |
Sobic.001G092700 |
- |
- |
| 18 |
Sobic.007G010350 |
- |
- |
| 19 |
Sobic.005G006900 |
RNA recognition motif containing protein, putative, expressed |
- |
| 20 |
Sobic.002G121100 |
OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed |
K16296: serine carboxypeptidase-like clade I |
Gene co-expression network
|
|
Octagon: transcription factors
