Gene annotation
Transcriptome id Sobic.006G247300.3,Sobic.006G247300.2
Synonym Sb06g031250, LACS4
Functional annotation AMP-binding enzyme, putative, expressed
UniProt A0A1Z5RFW5 , A0A1Z5RFG2
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF187
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G23850 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os01g48910.2 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a028029
Brachypodium KQJ92572
Barley HORVU5Hr1G046950.31 , HORVU5Hr1G046950.30 , HORVU5Hr1G046950.33 , HORVU5Hr1G046950.32 , HORVU5Hr1G046950.35 , HORVU5Hr1G046950.34 , HORVU5Hr1G046950.9 , HORVU5Hr1G046950.8 , HORVU5Hr1G046950.7 , HORVU5Hr1G046950.6 , HORVU5Hr1G046950.5 , HORVU5Hr1G046950.4 , HORVU5Hr1G046950.3 , HORVU5Hr1G046950.2 , HORVU5Hr1G046950.1 , HORVU5Hr1G046950.28 , HORVU5Hr1G046950.29 , HORVU5Hr1G046950.26 , HORVU5Hr1G046950.27 , HORVU5Hr1G046950.24 , HORVU5Hr1G046950.25 , HORVU5Hr1G046950.22 , HORVU5Hr1G046950.23 , HORVU5Hr1G046950.20 , HORVU5Hr1G046950.21 , HORVU5Hr1G046950.17 , HORVU5Hr1G046950.16 , HORVU5Hr1G046950.15 , HORVU5Hr1G046950.14 , HORVU5Hr1G046950.13 , HORVU5Hr1G046950.12 , HORVU5Hr1G046950.11 , HORVU5Hr1G046950.10 , HORVU5Hr1G046950.19 , HORVU5Hr1G046950.18
Wheat TraesCS5A02G148700 , TraesCS5B02G147300 , TraesCS5D02G144200 , TraesCS5D02G144200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G065866 - -
2 Sobic.010G040500 - -
3 Sobic.003G064600 - -
4 Sobic.004G131600 plasma membrane ATPase, putative, expressed -
5 Sobic.006G236100 - -
6 Sobic.008G076250 - -
7 Sobic.001G041450 - -
8 Sobic.006G053500 expressed protein K10990: RMI1, RecQ-mediated genome instability protein 1
9 Sobic.003G289000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@3-5 exonuclease domain-containing protein, putative, expressed -
10 Sobic.001G044200 uncharacterized 50.6 kDa protein in the 5region of gyrA and gyrB, putative, expressed -
11 Sobic.004G023733 - -
12 Sobic.010G103000 expressed protein -
13 Sobic.003G051300 expressed protein -
14 Sobic.005G156800 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
15 Sobic.002G380750 - -
16 Sobic.004G082200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
17 Sobic.006G159700 serpin domain containing protein, putative, expressed K13963: serpin B
18 Sobic.001G452400 OsFBX81 - F-box domain containing protein, expressed -
19 Sobic.003G291050 - -
20 Sobic.007G154901 - K01674: carbonic anhydrase


Gene co-expression network
sample Sobic006G247300 Sobic006G247300 Sobic008G065866 Sobic008G065866 Sobic006G247300--Sobic008G065866 Sobic010G040500 Sobic010G040500 Sobic006G247300--Sobic010G040500 Sobic003G064600 Sobic003G064600 Sobic006G247300--Sobic003G064600 Sobic004G131600 Sobic004G131600 Sobic006G247300--Sobic004G131600 Sobic006G236100 Sobic006G236100 Sobic006G247300--Sobic006G236100 Sobic008G076250 Sobic008G076250 Sobic006G247300--Sobic008G076250 Sobic001G041450 Sobic001G041450 Sobic006G247300--Sobic001G041450 Sobic006G053500 Sobic006G053500 Sobic006G247300--Sobic006G053500 Sobic003G289000 Sobic003G289000 Sobic006G247300--Sobic003G289000 Sobic008G065866--Sobic003G064600 Sobic001G267400 Sobic001G267400 Sobic008G065866--Sobic001G267400 Sobic002G348200 Sobic002G348200 Sobic008G065866--Sobic002G348200 Sobic007G006350 Sobic007G006350 Sobic008G065866--Sobic007G006350 Sobic001G220066 Sobic001G220066 Sobic008G065866--Sobic001G220066 Sobic002G157350 Sobic002G157350 Sobic008G065866--Sobic002G157350 Sobic006G159700 Sobic006G159700 Sobic008G065866--Sobic006G159700 Sobic001G255500 Sobic001G255500 Sobic008G065866--Sobic001G255500 Sobic008G065866--Sobic006G236100 Sobic002G264100 Sobic002G264100 Sobic010G040500--Sobic002G264100 Sobic007G154001 Sobic007G154001 Sobic010G040500--Sobic007G154001 Sobic003G146450 Sobic003G146450 Sobic010G040500--Sobic003G146450 Sobic002G342901 Sobic002G342901 Sobic010G040500--Sobic002G342901 Sobic003G318350 Sobic003G318350 Sobic010G040500--Sobic003G318350 Sobic001G443850 Sobic001G443850 Sobic010G040500--Sobic001G443850 Sobic001G062200 Sobic001G062200 Sobic010G040500--Sobic001G062200 Sobic004G286450 Sobic004G286450 Sobic010G040500--Sobic004G286450 Sobic005G057600 Sobic005G057600 Sobic010G040500--Sobic005G057600 Sobic003G064500 Sobic003G064500 Sobic003G064600--Sobic003G064500 Sobic001G044200 Sobic001G044200 Sobic003G064600--Sobic001G044200 Sobic003G064600--Sobic008G065866 Sobic003G064600--Sobic001G267400 Sobic004G082200 Sobic004G082200 Sobic003G064600--Sobic004G082200 Sobic003G064600--Sobic006G236100 Sobic003G064600--Sobic006G159700 Sobic002G035766 Sobic002G035766 Sobic003G064600--Sobic002G035766 Sobic007G154901 Sobic007G154901 Sobic003G064600--Sobic007G154901 Sobic007G173100 Sobic007G173100 Sobic004G131600--Sobic007G173100 Sobic007G173150 Sobic007G173150 Sobic004G131600--Sobic007G173150 Sobic010G154600 Sobic010G154600 Sobic004G131600--Sobic010G154600 Sobic004G133900 Sobic004G133900 Sobic004G131600--Sobic004G133900 Sobic009G107800 Sobic009G107800 Sobic004G131600--Sobic009G107800 Sobic003G158900 Sobic003G158900 Sobic004G131600--Sobic003G158900 Sobic002G099350 Sobic002G099350 Sobic004G131600--Sobic002G099350 Sobic004G124900 Sobic004G124900 Sobic004G131600--Sobic004G124900 Sobic008G088818 Sobic008G088818 Sobic004G131600--Sobic008G088818 Sobic001G379800 Sobic001G379800 Sobic006G236100--Sobic001G379800 Sobic004G196000 Sobic004G196000 Sobic006G236100--Sobic004G196000 Sobic001G493300 Sobic001G493300 Sobic006G236100--Sobic001G493300 Sobic002G069601 Sobic002G069601 Sobic006G236100--Sobic002G069601 Sobic008G192200 Sobic008G192200 Sobic006G236100--Sobic008G192200 Sobic004G023733 Sobic004G023733 Sobic006G236100--Sobic004G023733 Sobic006G236100--Sobic002G035766 Sobic003G141550 Sobic003G141550 Sobic006G236100--Sobic003G141550 Sobic003G058400 Sobic003G058400 Sobic006G236100--Sobic003G058400 Sobic008G076250--Sobic006G247300 Sobic005G227900 Sobic005G227900 Sobic008G076250--Sobic005G227900 SobicK044402 SobicK044402 Sobic008G076250--SobicK044402 Sobic010G170150 Sobic010G170150 Sobic008G076250--Sobic010G170150 Sobic004G022950 Sobic004G022950 Sobic008G076250--Sobic004G022950 Sobic002G185400 Sobic002G185400 Sobic008G076250--Sobic002G185400 Sobic007G055400 Sobic007G055400 Sobic008G076250--Sobic007G055400 Sobic003G177500 Sobic003G177500 Sobic008G076250--Sobic003G177500 Sobic001G075300 Sobic001G075300 Sobic008G076250--Sobic001G075300 Sobic001G272300 Sobic001G272300 Sobic001G041450--Sobic001G272300 Sobic003G034250 Sobic003G034250 Sobic006G053500--Sobic003G034250 Sobic008G154000 Sobic008G154000 Sobic006G053500--Sobic008G154000 Sobic003G091100 Sobic003G091100 Sobic006G053500--Sobic003G091100 Sobic010G229200 Sobic010G229200 Sobic006G053500--Sobic010G229200 Sobic001G218701 Sobic001G218701 Sobic006G053500--Sobic001G218701 Sobic007G024900 Sobic007G024900 Sobic006G053500--Sobic007G024900 Sobic007G100275 Sobic007G100275 Sobic006G053500--Sobic007G100275 Sobic006G053500--Sobic003G058400 SobicK042700 SobicK042700 Sobic006G053500--SobicK042700 Sobic005G082000 Sobic005G082000 Sobic003G289000--Sobic005G082000 Sobic003G063600 Sobic003G063600 Sobic003G289000--Sobic003G063600 Sobic004G289700 Sobic004G289700 Sobic003G289000--Sobic004G289700 Sobic005G156800 Sobic005G156800 Sobic003G289000--Sobic005G156800 Sobic002G380750 Sobic002G380750 Sobic003G289000--Sobic002G380750 Sobic005G163450 Sobic005G163450 Sobic003G289000--Sobic005G163450 Sobic001G452400 Sobic001G452400 Sobic003G289000--Sobic001G452400 Sobic003G289000--Sobic003G058400 Sobic003G049100 Sobic003G049100 Sobic003G289000--Sobic003G049100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.