Gene annotation
Transcriptome id Sobic.008G014900.1
Synonym
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt A0A1B6PB81
Pfam PF04857
Panther DB PTHR10797 PTHR10797:SF9
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G44260 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os10g03530.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK17035
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G319700 BCS1 protein, putative, expressed -
2 Sobic.007G095850 - -
3 Sobic.003G060900 OsFBX320 - F-box domain containing protein, expressed -
4 Sobic.007G215300 expressed protein -
5 Sobic.001G213150 - -
6 Sobic.009G029800 endoglucanase, putative, expressed -
7 Sobic.002G226600 - -
8 Sobic.003G141400 expressed protein -
9 Sobic.010G273200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
10 Sobic.005G204400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.005G059300 ctr copper transporter family protein, putative, expressed -
12 Sobic.002G237600 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
13 Sobic.005G144101 - -
14 Sobic.001G152240 - -
15 Sobic.010G228300 expressed protein -
16 Sobic.002G103400 - -
17 Sobic.009G142700 - -
18 Sobic.010G010100 powdery mildew resistance protein PM3b, putative, expressed -
19 Sobic.010G091750 - -
20 Sobic.001G482500 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic008G014900 Sobic008G014900 Sobic002G319700 Sobic002G319700 Sobic008G014900--Sobic002G319700 Sobic007G095850 Sobic007G095850 Sobic008G014900--Sobic007G095850 Sobic003G060900 Sobic003G060900 Sobic008G014900--Sobic003G060900 Sobic007G215300 Sobic007G215300 Sobic008G014900--Sobic007G215300 Sobic001G213150 Sobic001G213150 Sobic008G014900--Sobic001G213150 Sobic009G029800 Sobic009G029800 Sobic008G014900--Sobic009G029800 Sobic002G226600 Sobic002G226600 Sobic008G014900--Sobic002G226600 Sobic003G141400 Sobic003G141400 Sobic008G014900--Sobic003G141400 Sobic010G273200 Sobic010G273200 Sobic008G014900--Sobic010G273200 Sobic002G319700--Sobic008G014900 Sobic003G118700 Sobic003G118700 Sobic002G319700--Sobic003G118700 Sobic006G163066 Sobic006G163066 Sobic002G319700--Sobic006G163066 Sobic005G201800 Sobic005G201800 Sobic002G319700--Sobic005G201800 Sobic002G237600 Sobic002G237600 Sobic002G319700--Sobic002G237600 Sobic003G318650 Sobic003G318650 Sobic002G319700--Sobic003G318650 Sobic002G067050 Sobic002G067050 Sobic002G319700--Sobic002G067050 Sobic005G059300 Sobic005G059300 Sobic002G319700--Sobic005G059300 Sobic005G014600 Sobic005G014600 Sobic002G319700--Sobic005G014600 Sobic007G095850--Sobic007G215300 Sobic010G228300 Sobic010G228300 Sobic007G095850--Sobic010G228300 Sobic007G095850--Sobic001G213150 Sobic001G121000 Sobic001G121000 Sobic007G095850--Sobic001G121000 Sobic009G142700 Sobic009G142700 Sobic007G095850--Sobic009G142700 Sobic007G095850--Sobic003G060900 Sobic007G095850--Sobic009G029800 Sobic005G204400 Sobic005G204400 Sobic007G095850--Sobic005G204400 Sobic001G285700 Sobic001G285700 Sobic007G095850--Sobic001G285700 Sobic003G060900--Sobic001G213150 Sobic003G060900--Sobic010G273200 Sobic003G060900--Sobic009G029800 Sobic005G144101 Sobic005G144101 Sobic003G060900--Sobic005G144101 Sobic010G091750 Sobic010G091750 Sobic003G060900--Sobic010G091750 Sobic003G060900--Sobic007G215300 Sobic002G103400 Sobic002G103400 Sobic003G060900--Sobic002G103400 Sobic001G152240 Sobic001G152240 Sobic003G060900--Sobic001G152240 Sobic003G060900--Sobic005G204400 Sobic007G215300--Sobic001G213150 Sobic007G215300--Sobic009G029800 Sobic007G215300--Sobic003G060900 Sobic007G215300--Sobic005G204400 Sobic007G215300--Sobic010G228300 Sobic007G215300--Sobic009G142700 Sobic007G215300--Sobic007G095850 Sobic007G215300--Sobic010G273200 Sobic007G215300--Sobic005G144101 Sobic001G213150--Sobic009G029800 Sobic001G213150--Sobic003G060900 Sobic001G213150--Sobic007G215300 Sobic001G213150--Sobic010G273200 Sobic001G213150--Sobic005G144101 Sobic001G213150--Sobic005G204400 Sobic001G213150--Sobic010G091750 Sobic001G213150--Sobic002G103400 Sobic001G213150--Sobic003G141400 Sobic009G029800--Sobic001G213150 Sobic009G029800--Sobic003G060900 Sobic009G029800--Sobic010G273200 Sobic009G029800--Sobic005G144101 Sobic009G029800--Sobic007G215300 Sobic009G029800--Sobic002G103400 Sobic009G029800--Sobic001G152240 Sobic009G029800--Sobic010G091750 Sobic009G029800--Sobic003G141400 Sobic006G246800 Sobic006G246800 Sobic002G226600--Sobic006G246800 Sobic004G355101 Sobic004G355101 Sobic002G226600--Sobic004G355101 Sobic006G035950 Sobic006G035950 Sobic002G226600--Sobic006G035950 Sobic002G274850 Sobic002G274850 Sobic002G226600--Sobic002G274850 Sobic002G226600--Sobic001G121000 Sobic004G342700 Sobic004G342700 Sobic002G226600--Sobic004G342700 Sobic002G226600--Sobic001G285700 Sobic008G176401 Sobic008G176401 Sobic002G226600--Sobic008G176401 Sobic002G268450 Sobic002G268450 Sobic002G226600--Sobic002G268450 Sobic003G118750 Sobic003G118750 Sobic003G141400--Sobic003G118750 Sobic003G141400--Sobic009G029800 Sobic004G173900 Sobic004G173900 Sobic003G141400--Sobic004G173900 Sobic003G141400--Sobic001G213150 Sobic003G141400--Sobic005G059300 Sobic003G141400--Sobic010G273200 Sobic003G141400--Sobic002G103400 Sobic003G141400--Sobic003G060900 Sobic003G141400--Sobic010G091750 Sobic010G273200--Sobic005G144101 Sobic010G273200--Sobic001G152240 Sobic010G273200--Sobic002G103400 Sobic010G273200--Sobic010G091750 Sobic010G273200--Sobic003G060900 Sobic010G273200--Sobic009G029800 Sobic004G173800 Sobic004G173800 Sobic010G273200--Sobic004G173800 Sobic007G087500 Sobic007G087500 Sobic010G273200--Sobic007G087500 Sobic006G004700 Sobic006G004700 Sobic010G273200--Sobic006G004700
Octagon: transcription factors


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