Gene annotation
Transcriptome id Sobic.010G156700.1
Synonym Sb10g020965, ATL3
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YJI5
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF86
NCBI CDD -
KEGG Orthology K19038; E3 ubiquitin-protein ligase ATL41
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G42360 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34360.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK18120
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G146100 aquaporin protein, putative, expressed K09873: aquaporin TIP
2 Sobic.007G221400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
3 Sobic.006G026800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
4 Sobic.005G204000 OsGrx_C17 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
5 Sobic.008G117300 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
6 Sobic.004G071750 - -
7 Sobic.001G260850 - -
8 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
9 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
10 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
11 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
12 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
13 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
14 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
15 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
16 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
17 Sobic.001G066600 mTERF domain containing protein, expressed -
18 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
19 Sobic.003G369000 - -
20 Sobic.002G048501 - -


Gene co-expression network
sample Sobic010G156700 Sobic010G156700 Sobic010G146100 Sobic010G146100 Sobic010G156700--Sobic010G146100 Sobic007G221400 Sobic007G221400 Sobic010G156700--Sobic007G221400 Sobic006G026800 Sobic006G026800 Sobic010G156700--Sobic006G026800 Sobic005G204000 Sobic005G204000 Sobic010G156700--Sobic005G204000 Sobic008G117300 Sobic008G117300 Sobic010G156700--Sobic008G117300 Sobic004G071750 Sobic004G071750 Sobic010G156700--Sobic004G071750 Sobic001G260850 Sobic001G260850 Sobic010G156700--Sobic001G260850 Sobic001G160700 Sobic001G160700 Sobic010G156700--Sobic001G160700 Sobic010G146100--Sobic004G071750 Sobic010G146100--Sobic001G160700 Sobic007G221400--Sobic004G071750 Sobic007G221400--Sobic008G117300 Sobic007G221400--Sobic005G204000 Sobic001G066600 Sobic001G066600 Sobic007G221400--Sobic001G066600 Sobic007G221400--Sobic001G160700 Sobic006G026800--Sobic001G160700 Sobic005G204000--Sobic008G117300 Sobic005G204000--Sobic004G071750 Sobic005G204000--Sobic001G160700 Sobic008G117300--Sobic005G204000 Sobic008G117300--Sobic004G071750 Sobic008G117300--Sobic001G066600 Sobic005G203900 Sobic005G203900 Sobic008G117300--Sobic005G203900 Sobic008G117300--Sobic001G260850 Sobic008G117300--Sobic007G221400 Sobic009G165200 Sobic009G165200 Sobic008G117300--Sobic009G165200 Sobic002G048501 Sobic002G048501 Sobic008G117300--Sobic002G048501 Sobic003G163700 Sobic003G163700 Sobic008G117300--Sobic003G163700 Sobic004G071750--Sobic001G160700 Sobic001G260850--Sobic005G204000 Sobic001G260850--Sobic005G203900 Sobic001G260850--Sobic008G117300 Sobic001G435500 Sobic001G435500 Sobic001G260850--Sobic001G435500 Sobic010G128000 Sobic010G128000 Sobic001G260850--Sobic010G128000 Sobic002G337001 Sobic002G337001 Sobic001G260850--Sobic002G337001 Sobic003G369000 Sobic003G369000 Sobic001G260850--Sobic003G369000 Sobic008G036350 Sobic008G036350 Sobic001G260850--Sobic008G036350 Sobic001G260850--Sobic001G066600 Sobic001G160700--Sobic001G160700 Sobic001G160700--Sobic004G071750
Octagon: transcription factors


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