Gene annotation
Transcriptome id Sobic.010G239400.1
Synonym Sb10g028010
Functional annotation oryzain beta chain precursor, putative, expressed
UniProt C5Z8D3
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF344
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G43060 : Granulin repeat cysteine protease family protein
RAP-DB (Rice) LOC_Os04g57440.1 : oryzain beta chain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041837 , Zm00025a041836
Brachypodium KQJ90836
Barley -
Wheat TraesCS1D02G026500 , TraesCS1A02G027300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G154300 expressed protein -
2 Sobic.010G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G095400 metal transporter Nramp6, putative, expressed -
4 Sobic.004G086500 expressed protein -
5 Sobic.005G122850 - -
6 Sobic.006G156200 - -
7 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -
8 Sobic.006G239600 - -
9 Sobic.010G048500 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
10 Sobic.001G123650 - -
11 Sobic.001G123650 - -
12 Sobic.001G123650 - -
13 Sobic.001G123650 - -
14 Sobic.001G123650 - -
15 Sobic.001G123650 - -
16 Sobic.001G123650 - -
17 Sobic.001G123650 - -
18 Sobic.001G123650 - -
19 Sobic.001G123650 - -
20 Sobic.001G123650 - -


Gene co-expression network
sample Sobic010G239400 Sobic010G239400 Sobic010G154300 Sobic010G154300 Sobic010G239400--Sobic010G154300 Sobic010G215800 Sobic010G215800 Sobic010G239400--Sobic010G215800 Sobic002G095400 Sobic002G095400 Sobic010G239400--Sobic002G095400 Sobic004G086500 Sobic004G086500 Sobic010G239400--Sobic004G086500 Sobic005G122850 Sobic005G122850 Sobic010G239400--Sobic005G122850 Sobic006G156200 Sobic006G156200 Sobic010G239400--Sobic006G156200 Sobic002G343600 Sobic002G343600 Sobic010G239400--Sobic002G343600 Sobic006G239600 Sobic006G239600 Sobic010G239400--Sobic006G239600 Sobic010G048500 Sobic010G048500 Sobic010G239400--Sobic010G048500 Sobic002G066350 Sobic002G066350 Sobic010G154300--Sobic002G066350 Sobic010G130900 Sobic010G130900 Sobic010G154300--Sobic010G130900 Sobic002G023500 Sobic002G023500 Sobic010G154300--Sobic002G023500 Sobic007G014300 Sobic007G014300 Sobic010G154300--Sobic007G014300 Sobic001G123650 Sobic001G123650 Sobic010G154300--Sobic001G123650 Sobic010G222100 Sobic010G222100 Sobic010G215800--Sobic010G222100 Sobic002G289800 Sobic002G289800 Sobic010G215800--Sobic002G289800 Sobic010G215800--Sobic010G239400 Sobic001G439100 Sobic001G439100 Sobic010G215800--Sobic001G439100 Sobic002G039100 Sobic002G039100 Sobic010G215800--Sobic002G039100 Sobic003G279100 Sobic003G279100 Sobic010G215800--Sobic003G279100 Sobic005G129700 Sobic005G129700 Sobic010G215800--Sobic005G129700 Sobic009G033800 Sobic009G033800 Sobic010G215800--Sobic009G033800 Sobic001G505000 Sobic001G505000 Sobic010G215800--Sobic001G505000 Sobic010G171800 Sobic010G171800 Sobic002G095400--Sobic010G171800 Sobic002G095400--Sobic010G239400 Sobic006G170300 Sobic006G170300 Sobic002G095400--Sobic006G170300 Sobic010G163732 Sobic010G163732 Sobic002G095400--Sobic010G163732 Sobic001G160100 Sobic001G160100 Sobic002G095400--Sobic001G160100 Sobic002G095400--Sobic004G086500 Sobic006G031900 Sobic006G031900 Sobic002G095400--Sobic006G031900 Sobic002G095400--Sobic002G343600 Sobic003G140500 Sobic003G140500 Sobic002G095400--Sobic003G140500 Sobic004G277700 Sobic004G277700 Sobic004G086500--Sobic004G277700 Sobic009G059800 Sobic009G059800 Sobic004G086500--Sobic009G059800 Sobic010G237400 Sobic010G237400 Sobic004G086500--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic004G086500--Sobic003G369800 Sobic004G056500 Sobic004G056500 Sobic004G086500--Sobic004G056500 Sobic009G059932 Sobic009G059932 Sobic004G086500--Sobic009G059932 Sobic002G102800 Sobic002G102800 Sobic004G086500--Sobic002G102800 Sobic004G254300 Sobic004G254300 Sobic004G086500--Sobic004G254300 Sobic009G059866 Sobic009G059866 Sobic004G086500--Sobic009G059866 Sobic005G122850--Sobic010G239400 Sobic005G122850--Sobic010G154300 Sobic005G122850--Sobic001G123650 Sobic006G156200--Sobic010G048500 Sobic006G156200--Sobic006G239600 Sobic005G131000 Sobic005G131000 Sobic006G156200--Sobic005G131000 Sobic006G006400 Sobic006G006400 Sobic006G156200--Sobic006G006400 Sobic006G156200--Sobic001G123650 Sobic006G076000 Sobic006G076000 Sobic002G343600--Sobic006G076000 Sobic002G343600--Sobic004G086500 Sobic002G343600--Sobic004G277700 Sobic002G343600--Sobic006G031900 Sobic002G343600--Sobic009G059800 Sobic010G048600 Sobic010G048600 Sobic002G343600--Sobic010G048600 Sobic001G456000 Sobic001G456000 Sobic002G343600--Sobic001G456000 Sobic007G218400 Sobic007G218400 Sobic002G343600--Sobic007G218400 Sobic002G343600--Sobic009G059932 Sobic006G239600--Sobic001G123650 Sobic010G048500--Sobic005G131000 Sobic010G048500--Sobic006G156200 Sobic009G019550 Sobic009G019550 Sobic010G048500--Sobic009G019550 Sobic010G048500--Sobic004G254300 Sobic010G048500--Sobic002G023500 Sobic003G231000 Sobic003G231000 Sobic010G048500--Sobic003G231000 Sobic010G048500--Sobic004G056500 Sobic010G048500--Sobic002G066350 Sobic010G048500--Sobic010G130900
Octagon: transcription factors


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