Gene annotation
Transcriptome id Sobic.002G095400.1
Synonym NRAMP1, Sb02g007870, ATNRAMP1, PMIT1
Functional annotation metal transporter Nramp6, putative, expressed
UniProt A0A1W0W334
Pfam PF01566
Panther DB PTHR11706 PTHR11706:SF38
NCBI CDD KOG1291; Mn2+ and Fe2+ transporters of the NRAMP family
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G80830 : natural resistance-associated macrophage protein 1
RAP-DB (Rice) LOC_Os07g15370.1 : metal transporter Nramp6, putative, expressed
MaizeGDB (Corn) Zm00025a013619 , Zm00025a045539
Brachypodium PNT76769 , KQK20218 , KQK20219
Barley HORVU4Hr1G077510.4 , HORVU4Hr1G077510.10 , HORVU4Hr1G077510.11 , HORVU4Hr1G077510.12 , HORVU4Hr1G077510.13 , HORVU4Hr1G077510.14 , HORVU4Hr1G077510.15 , HORVU4Hr1G077510.16 , HORVU4Hr1G077510.8 , HORVU4Hr1G077510.9 , HORVU4Hr1G077510.2 , HORVU4Hr1G077510.3 , HORVU4Hr1G077510.1 , HORVU4Hr1G077510.6 , HORVU4Hr1G077510.7 , HORVU4Hr1G077510.5
Wheat TraesCS4B02G300600 , TraesCS4A02G004400 , TraesCS4D02G299400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G171800 L-ascorbate oxidase precursor, putative, expressed K00423: L-ascorbate oxidase
2 Sobic.010G239400 oryzain beta chain precursor, putative, expressed -
3 Sobic.006G170300 NAB1 encodes a carotenoid-cleavage dioxygenase 7 (CCD7). The nab1 mutation causes outgrowth of basal axillary buds.It was suggested that NAB1 functions in strigolactone biosynthesis and the regulation of shoot branching via an interaction with auxin transport.(PubMedID : 29740955)@-(PubMedID : 34525227)@Expressed in older stem(PubMedID : 28649278)@carotenoid cleavage dioxygenase 7, chloroplast precursor, putative, expressed K17912: 9-cis-beta-carotene 9',10'-cleaving dioxygenase
4 Sobic.010G163732 - -
5 Sobic.001G160100 IQ calmodulin-binding motif family protein, putative, expressed -
6 Sobic.004G086500 expressed protein -
7 Sobic.006G031900 expansin precursor, putative, expressed -
8 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -
9 Sobic.003G140500 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
10 Sobic.009G128101 - -
11 Sobic.010G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.006G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@- -
13 Sobic.006G099001 - -
14 Sobic.009G108050 - -
15 Sobic.004G070900 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.010G154300 expressed protein -
17 Sobic.002G255600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.010G230400 expressed protein -
19 Sobic.004G277700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.005G142300 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins


Gene co-expression network
sample Sobic002G095400 Sobic002G095400 Sobic010G171800 Sobic010G171800 Sobic002G095400--Sobic010G171800 Sobic010G239400 Sobic010G239400 Sobic002G095400--Sobic010G239400 Sobic006G170300 Sobic006G170300 Sobic002G095400--Sobic006G170300 Sobic010G163732 Sobic010G163732 Sobic002G095400--Sobic010G163732 Sobic001G160100 Sobic001G160100 Sobic002G095400--Sobic001G160100 Sobic004G086500 Sobic004G086500 Sobic002G095400--Sobic004G086500 Sobic006G031900 Sobic006G031900 Sobic002G095400--Sobic006G031900 Sobic002G343600 Sobic002G343600 Sobic002G095400--Sobic002G343600 Sobic003G140500 Sobic003G140500 Sobic002G095400--Sobic003G140500 Sobic010G189500 Sobic010G189500 Sobic010G171800--Sobic010G189500 Sobic006G065400 Sobic006G065400 Sobic010G171800--Sobic006G065400 Sobic009G120700 Sobic009G120700 Sobic010G171800--Sobic009G120700 Sobic007G100600 Sobic007G100600 Sobic010G171800--Sobic007G100600 Sobic010G171800--Sobic001G160100 Sobic004G273000 Sobic004G273000 Sobic010G171800--Sobic004G273000 Sobic001G289900 Sobic001G289900 Sobic010G171800--Sobic001G289900 Sobic010G171800--Sobic002G343600 Sobic006G076000 Sobic006G076000 Sobic010G171800--Sobic006G076000 Sobic010G154300 Sobic010G154300 Sobic010G239400--Sobic010G154300 Sobic010G215800 Sobic010G215800 Sobic010G239400--Sobic010G215800 Sobic010G239400--Sobic002G095400 Sobic010G239400--Sobic004G086500 Sobic005G122850 Sobic005G122850 Sobic010G239400--Sobic005G122850 Sobic006G156200 Sobic006G156200 Sobic010G239400--Sobic006G156200 Sobic010G239400--Sobic002G343600 Sobic006G239600 Sobic006G239600 Sobic010G239400--Sobic006G239600 Sobic010G048500 Sobic010G048500 Sobic010G239400--Sobic010G048500 Sobic006G170300--Sobic002G095400 Sobic010G071400 Sobic010G071400 Sobic006G170300--Sobic010G071400 Sobic002G372800 Sobic002G372800 Sobic006G170300--Sobic002G372800 Sobic010G008600 Sobic010G008600 Sobic006G170300--Sobic010G008600 Sobic006G282300 Sobic006G282300 Sobic006G170300--Sobic006G282300 Sobic001G084100 Sobic001G084100 Sobic006G170300--Sobic001G084100 Sobic003G119500 Sobic003G119500 Sobic006G170300--Sobic003G119500 Sobic003G227700 Sobic003G227700 Sobic006G170300--Sobic003G227700 Sobic010G052200 Sobic010G052200 Sobic006G170300--Sobic010G052200 Sobic003G383100 Sobic003G383100 Sobic010G163732--Sobic003G383100 Sobic003G137700 Sobic003G137700 Sobic010G163732--Sobic003G137700 Sobic001G439100 Sobic001G439100 Sobic010G163732--Sobic001G439100 Sobic003G174700 Sobic003G174700 Sobic010G163732--Sobic003G174700 Sobic010G163732--Sobic010G171800 Sobic010G163732--Sobic009G120700 Sobic010G163732--Sobic002G095400 Sobic010G163732--Sobic010G215800 Sobic010G163732--Sobic001G160100 Sobic003G319900 Sobic003G319900 Sobic001G160100--Sobic003G319900 Sobic001G160100--Sobic004G086500 Sobic005G168400 Sobic005G168400 Sobic001G160100--Sobic005G168400 Sobic001G160100--Sobic006G076000 Sobic001G160100--Sobic006G065400 Sobic001G160100--Sobic002G343600 Sobic007G132900 Sobic007G132900 Sobic001G160100--Sobic007G132900 Sobic004G000800 Sobic004G000800 Sobic001G160100--Sobic004G000800 Sobic004G237000 Sobic004G237000 Sobic001G160100--Sobic004G237000 Sobic004G277700 Sobic004G277700 Sobic004G086500--Sobic004G277700 Sobic009G059800 Sobic009G059800 Sobic004G086500--Sobic009G059800 Sobic010G237400 Sobic010G237400 Sobic004G086500--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic004G086500--Sobic003G369800 Sobic004G056500 Sobic004G056500 Sobic004G086500--Sobic004G056500 Sobic009G059932 Sobic009G059932 Sobic004G086500--Sobic009G059932 Sobic002G102800 Sobic002G102800 Sobic004G086500--Sobic002G102800 Sobic004G254300 Sobic004G254300 Sobic004G086500--Sobic004G254300 Sobic009G059866 Sobic009G059866 Sobic004G086500--Sobic009G059866 Sobic006G031900--Sobic002G343600 Sobic006G031900--Sobic004G086500 Sobic006G031900--Sobic004G277700 Sobic001G157700 Sobic001G157700 Sobic006G031900--Sobic001G157700 Sobic002G178800 Sobic002G178800 Sobic006G031900--Sobic002G178800 Sobic010G048600 Sobic010G048600 Sobic006G031900--Sobic010G048600 Sobic005G070700 Sobic005G070700 Sobic006G031900--Sobic005G070700 Sobic001G274300 Sobic001G274300 Sobic006G031900--Sobic001G274300 Sobic001G459300 Sobic001G459300 Sobic006G031900--Sobic001G459300 Sobic002G343600--Sobic006G076000 Sobic002G343600--Sobic004G086500 Sobic002G343600--Sobic004G277700 Sobic002G343600--Sobic006G031900 Sobic002G343600--Sobic009G059800 Sobic002G343600--Sobic010G048600 Sobic001G456000 Sobic001G456000 Sobic002G343600--Sobic001G456000 Sobic007G218400 Sobic007G218400 Sobic002G343600--Sobic007G218400 Sobic002G343600--Sobic009G059932 Sobic009G128101 Sobic009G128101 Sobic003G140500--Sobic009G128101 Sobic001G123650 Sobic001G123650 Sobic003G140500--Sobic001G123650
Octagon: transcription factors


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