Gene annotation
Transcriptome id Sobic.006G170300.1
Synonym SbCCD7;CAROTENOID CLEAVAGE DIOXYGENASE 7, NAB1;CAROTENOID CLEAVAGE DIOXYGENASE 7, Sb06g024560, Non-dormant Axillary Bud 1, ATCCD7, SbCCD7, CCD7, MAX3
Functional annotation NAB1 encodes a carotenoid-cleavage dioxygenase 7 (CCD7). The nab1 mutation causes outgrowth of basal axillary buds.It was suggested that NAB1 functions in strigolactone biosynthesis and the regulation of shoot branching via an interaction with auxin transport. (PubMedID : 29740955)
- (PubMedID : 34525227)
Expressed in older stem (PubMedID : 28649278)
carotenoid cleavage dioxygenase 7, chloroplast precursor, putative, expressed
UniProt A0A1Z5RED1 , A0A1V0JAM1
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF36
NCBI CDD KOG1285; Beta, beta-carotene 15,15'-dioxygenase and related enzymes
KEGG Orthology K17912; 9-cis-beta-carotene 9',10'-cleaving dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44990 : carotenoid cleavage dioxygenase 7
RAP-DB (Rice) LOC_Os04g46470.1 : carotenoid cleavage dioxygenase 7, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a010304
Brachypodium KQJ83936
Barley HORVU2Hr1G097770.1 , HORVU0Hr1G006450.3 , HORVU0Hr1G006450.2 , HORVU0Hr1G006450.1
Wheat TraesCS2D02G411900 , TraesCS2B02G433800 , TraesCS2A02G414600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G095400 metal transporter Nramp6, putative, expressed -
2 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G372800 tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.010G008600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLD2 - cellulose synthase-like family D, expressed -
5 Sobic.006G282300 - -
6 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
7 Sobic.003G119500 expressed protein -
8 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
9 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
10 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
11 Sobic.007G009500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed -
12 Sobic.005G142300 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
13 Sobic.003G410800 exostosin family domain containing protein, expressed -
14 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
15 Sobic.010G069900 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
16 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
17 Sobic.004G121200 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.010G080400 AP2 domain containing protein, expressed -
19 Sobic.001G235800 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.009G002400 polygalacturonase inhibitor precursor, putative, expressed -


Gene co-expression network
sample Sobic006G170300 Sobic006G170300 Sobic002G095400 Sobic002G095400 Sobic006G170300--Sobic002G095400 Sobic010G071400 Sobic010G071400 Sobic006G170300--Sobic010G071400 Sobic002G372800 Sobic002G372800 Sobic006G170300--Sobic002G372800 Sobic010G008600 Sobic010G008600 Sobic006G170300--Sobic010G008600 Sobic006G282300 Sobic006G282300 Sobic006G170300--Sobic006G282300 Sobic001G084100 Sobic001G084100 Sobic006G170300--Sobic001G084100 Sobic003G119500 Sobic003G119500 Sobic006G170300--Sobic003G119500 Sobic003G227700 Sobic003G227700 Sobic006G170300--Sobic003G227700 Sobic010G052200 Sobic010G052200 Sobic006G170300--Sobic010G052200 Sobic010G171800 Sobic010G171800 Sobic002G095400--Sobic010G171800 Sobic010G239400 Sobic010G239400 Sobic002G095400--Sobic010G239400 Sobic002G095400--Sobic006G170300 Sobic010G163732 Sobic010G163732 Sobic002G095400--Sobic010G163732 Sobic001G160100 Sobic001G160100 Sobic002G095400--Sobic001G160100 Sobic004G086500 Sobic004G086500 Sobic002G095400--Sobic004G086500 Sobic006G031900 Sobic006G031900 Sobic002G095400--Sobic006G031900 Sobic002G343600 Sobic002G343600 Sobic002G095400--Sobic002G343600 Sobic003G140500 Sobic003G140500 Sobic002G095400--Sobic003G140500 Sobic006G274933 Sobic006G274933 Sobic010G071400--Sobic006G274933 Sobic010G071400--Sobic003G227700 Sobic002G183700 Sobic002G183700 Sobic010G071400--Sobic002G183700 Sobic010G071400--Sobic003G119500 Sobic004G029100 Sobic004G029100 Sobic010G071400--Sobic004G029100 Sobic004G322100 Sobic004G322100 Sobic010G071400--Sobic004G322100 Sobic003G140700 Sobic003G140700 Sobic010G071400--Sobic003G140700 Sobic008G019800 Sobic008G019800 Sobic010G071400--Sobic008G019800 Sobic006G256900 Sobic006G256900 Sobic010G071400--Sobic006G256900 Sobic007G009500 Sobic007G009500 Sobic002G372800--Sobic007G009500 Sobic003G127100 Sobic003G127100 Sobic002G372800--Sobic003G127100 Sobic001G108350 Sobic001G108350 Sobic002G372800--Sobic001G108350 Sobic004G257800 Sobic004G257800 Sobic002G372800--Sobic004G257800 Sobic005G110490 Sobic005G110490 Sobic002G372800--Sobic005G110490 Sobic001G063600 Sobic001G063600 Sobic002G372800--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic002G372800--Sobic002G325900 Sobic006G242100 Sobic006G242100 Sobic002G372800--Sobic006G242100 Sobic002G372800--Sobic010G008600 Sobic010G008600--Sobic003G127100 Sobic010G101400 Sobic010G101400 Sobic010G008600--Sobic010G101400 Sobic004G264600 Sobic004G264600 Sobic010G008600--Sobic004G264600 Sobic010G030900 Sobic010G030900 Sobic010G008600--Sobic010G030900 Sobic009G194200 Sobic009G194200 Sobic010G008600--Sobic009G194200 Sobic010G008600--Sobic001G063600 Sobic001G061900 Sobic001G061900 Sobic010G008600--Sobic001G061900 Sobic001G476400 Sobic001G476400 Sobic010G008600--Sobic001G476400 Sobic010G008600--Sobic002G372800 Sobic002G365550 Sobic002G365550 Sobic006G282300--Sobic002G365550 Sobic004G071000 Sobic004G071000 Sobic006G282300--Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic006G282300--Sobic002G365801 Sobic006G028400 Sobic006G028400 Sobic006G282300--Sobic006G028400 Sobic008G055100 Sobic008G055100 Sobic006G282300--Sobic008G055100 Sobic010G096400 Sobic010G096400 Sobic006G282300--Sobic010G096400 Sobic010G212500 Sobic010G212500 Sobic006G282300--Sobic010G212500 Sobic006G282300--Sobic003G119500 Sobic007G178900 Sobic007G178900 Sobic006G282300--Sobic007G178900 Sobic001G532200 Sobic001G532200 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic006G156000 Sobic006G156000 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic005G168100 Sobic005G168100 Sobic001G084100--Sobic005G168100 Sobic004G212300 Sobic004G212300 Sobic001G084100--Sobic004G212300 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic003G119500--Sobic010G212500 Sobic003G311800 Sobic003G311800 Sobic003G119500--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic003G119500--Sobic002G003800 Sobic009G109000 Sobic009G109000 Sobic003G119500--Sobic009G109000 Sobic001G049900 Sobic001G049900 Sobic003G119500--Sobic001G049900 Sobic003G119500--Sobic006G274933 Sobic004G348800 Sobic004G348800 Sobic003G119500--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic003G119500--Sobic004G297900 Sobic010G085800 Sobic010G085800 Sobic003G119500--Sobic010G085800 Sobic010G069900 Sobic010G069900 Sobic003G227700--Sobic010G069900 Sobic003G257400 Sobic003G257400 Sobic003G227700--Sobic003G257400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic001G006201 Sobic001G006201 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic004G106100 Sobic004G106100 Sobic003G227700--Sobic004G106100 Sobic010G052200--Sobic004G212300 Sobic010G052200--Sobic001G084100 Sobic010G052200--Sobic001G532200 Sobic002G128800 Sobic002G128800 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic003G037800 Sobic003G037800 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic010G052200--Sobic006G156000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.