Gene annotation
Transcriptome id Sobic.010G008600.1
Synonym KJK, CSLD3, Sb10g000980, ATCSLD3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CSLD2 - cellulose synthase-like family D, expressed
UniProt C5Z2Q3
Pfam PF13632 PF14570
Panther DB PTHR13301 PTHR13301:SF55
NCBI CDD KOG0320; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03050 : cellulose synthase-like D3
RAP-DB (Rice) LOC_Os06g02180.1 : CSLD2 - cellulose synthase-like family D, expressed
MaizeGDB (Corn) Zm00025a018006 , Zm00025a050769 , Zm00025a006226 , Zm00025a050280
Brachypodium KQJ97985 , KQJ97984 , KQK19741 , KQJ96300
Barley HORVU7Hr1G005270.1 , HORVU7Hr1G005270.3 , HORVU7Hr1G005270.2 , HORVU7Hr1G005270.5 , HORVU7Hr1G005270.4 , HORVU7Hr1G005270.6 , HORVU3Hr1G034560.3
Wheat TraesCS1D02G199500 , TraesCS1A02G196100 , TraesCS1B02G210700 , TraesCS7A02G033100 , TraesCS4A02G456300 , TraesCS7D02G029700 , TraesCS4A02G355000 , TraesCS4A02G355000 , TraesCS4A02G355000 , TraesCS4A02G355000
Populus -


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cDNA sequences
Sobic.010G008600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G127100 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.010G101400 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.004G264600 expressed protein -
4 Sobic.010G030900 glycosyltransferase, putative, expressed -
5 Sobic.009G194200 CSLC7 - cellulose synthase-like family C, expressed -
6 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.001G061900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
8 Sobic.001G476400 - -
9 Sobic.002G372800 tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.006G081600 expressed protein -
11 Sobic.010G080400 AP2 domain containing protein, expressed -
12 Sobic.004G257300 GPI-anchored protein, putative, expressed -
13 Sobic.001G321800 OsRhmbd7 - Putative Rhomboid homologue, expressed -
14 Sobic.008G119400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
15 Sobic.001G038200 leaf senescence related protein, putative, expressed -
16 Sobic.006G242100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase family 43 protein, putative, expressed -
17 Sobic.002G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed -
18 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
19 Sobic.004G261200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G124700 up-regulated by silicon application(PubMedID : 24879770)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP


Gene co-expression network
sample Sobic010G008600 Sobic010G008600 Sobic003G127100 Sobic003G127100 Sobic010G008600--Sobic003G127100 Sobic010G101400 Sobic010G101400 Sobic010G008600--Sobic010G101400 Sobic004G264600 Sobic004G264600 Sobic010G008600--Sobic004G264600 Sobic010G030900 Sobic010G030900 Sobic010G008600--Sobic010G030900 Sobic009G194200 Sobic009G194200 Sobic010G008600--Sobic009G194200 Sobic001G063600 Sobic001G063600 Sobic010G008600--Sobic001G063600 Sobic001G061900 Sobic001G061900 Sobic010G008600--Sobic001G061900 Sobic001G476400 Sobic001G476400 Sobic010G008600--Sobic001G476400 Sobic002G372800 Sobic002G372800 Sobic010G008600--Sobic002G372800 Sobic003G127100--Sobic010G008600 Sobic003G127100--Sobic002G372800 Sobic008G168100 Sobic008G168100 Sobic003G127100--Sobic008G168100 Sobic003G127100--Sobic010G101400 Sobic006G242100 Sobic006G242100 Sobic003G127100--Sobic006G242100 Sobic001G063500 Sobic001G063500 Sobic003G127100--Sobic001G063500 Sobic006G081600 Sobic006G081600 Sobic003G127100--Sobic006G081600 Sobic004G033000 Sobic004G033000 Sobic003G127100--Sobic004G033000 Sobic001G294400 Sobic001G294400 Sobic003G127100--Sobic001G294400 Sobic010G101400--Sobic010G008600 Sobic008G119400 Sobic008G119400 Sobic010G101400--Sobic008G119400 Sobic007G216500 Sobic007G216500 Sobic010G101400--Sobic007G216500 Sobic010G101400--Sobic010G030900 Sobic010G101400--Sobic003G127100 Sobic002G113500 Sobic002G113500 Sobic010G101400--Sobic002G113500 Sobic010G101400--Sobic009G194200 Sobic004G257300 Sobic004G257300 Sobic010G101400--Sobic004G257300 Sobic001G321800 Sobic001G321800 Sobic010G101400--Sobic001G321800 Sobic004G264600--Sobic010G008600 Sobic004G264600--Sobic006G242100 Sobic004G303600 Sobic004G303600 Sobic004G264600--Sobic004G303600 Sobic003G319000 Sobic003G319000 Sobic004G264600--Sobic003G319000 Sobic009G182200 Sobic009G182200 Sobic004G264600--Sobic009G182200 Sobic004G172100 Sobic004G172100 Sobic004G264600--Sobic004G172100 Sobic003G410400 Sobic003G410400 Sobic004G264600--Sobic003G410400 Sobic004G264600--Sobic010G030900 Sobic004G264600--Sobic009G194200 Sobic010G030900--Sobic004G257300 Sobic002G248100 Sobic002G248100 Sobic010G030900--Sobic002G248100 Sobic010G030900--Sobic001G476400 Sobic003G150400 Sobic003G150400 Sobic010G030900--Sobic003G150400 Sobic009G184400 Sobic009G184400 Sobic010G030900--Sobic009G184400 Sobic003G296700 Sobic003G296700 Sobic010G030900--Sobic003G296700 Sobic001G051600 Sobic001G051600 Sobic010G030900--Sobic001G051600 Sobic001G173300 Sobic001G173300 Sobic010G030900--Sobic001G173300 Sobic007G180300 Sobic007G180300 Sobic010G030900--Sobic007G180300 Sobic009G194200--Sobic010G008600 Sobic001G436100 Sobic001G436100 Sobic009G194200--Sobic001G436100 Sobic004G261200 Sobic004G261200 Sobic009G194200--Sobic004G261200 Sobic003G410700 Sobic003G410700 Sobic009G194200--Sobic003G410700 Sobic009G194200--Sobic001G061900 Sobic009G194200--Sobic006G242100 Sobic004G262600 Sobic004G262600 Sobic009G194200--Sobic004G262600 Sobic009G194200--Sobic010G101400 Sobic001G038200 Sobic001G038200 Sobic009G194200--Sobic001G038200 Sobic001G063600--Sobic001G476400 Sobic005G231700 Sobic005G231700 Sobic001G063600--Sobic005G231700 Sobic010G080400 Sobic010G080400 Sobic001G063600--Sobic010G080400 Sobic008G159100 Sobic008G159100 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic001G316900 Sobic001G316900 Sobic001G061900--Sobic001G316900 Sobic001G061900--Sobic010G008600 Sobic001G061900--Sobic009G194200 Sobic001G061900--Sobic001G321800 Sobic001G061900--Sobic002G068800 Sobic001G515800 Sobic001G515800 Sobic001G061900--Sobic001G515800 Sobic007G223200 Sobic007G223200 Sobic001G061900--Sobic007G223200 Sobic003G424300 Sobic003G424300 Sobic001G061900--Sobic003G424300 Sobic001G217300 Sobic001G217300 Sobic001G061900--Sobic001G217300 Sobic001G476400--Sobic001G063600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic001G476400--Sobic010G080400 Sobic006G095600 Sobic006G095600 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic007G009500 Sobic007G009500 Sobic002G372800--Sobic007G009500 Sobic002G372800--Sobic003G127100 Sobic001G108350 Sobic001G108350 Sobic002G372800--Sobic001G108350 Sobic004G257800 Sobic004G257800 Sobic002G372800--Sobic004G257800 Sobic005G110490 Sobic005G110490 Sobic002G372800--Sobic005G110490 Sobic002G372800--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic002G372800--Sobic002G325900 Sobic002G372800--Sobic006G242100 Sobic002G372800--Sobic010G008600
Octagon: transcription factors


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