Gene annotation
Transcriptome id Sobic.006G081600.1
Synonym Sb06g016840
Functional annotation expressed protein
UniProt C5Y8M2
Pfam -
Panther DB PTHR31852 PTHR31852:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G45688 : -
RAP-DB (Rice) LOC_Os04g35130.1 : expressed protein
MaizeGDB (Corn) Zm00025a010530 , Zm00025a056067 , Zm00025a011384
Brachypodium KQJ85466 , KQJ82644
Barley HORVU4Hr1G034490.1
Wheat TraesCS2A02G302900 , TraesCS2A02G570700 , TraesCS2D02G301600 , TraesCS2B02G319600 , TraesCS2D02G582200 , TraesCSU02G038400
Populus -


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cDNA sequences
Sobic.006G081600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G008600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLD2 - cellulose synthase-like family D, expressed -
2 Sobic.002G372800 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.009G073300 harpin-induced protein 1 domain containing protein, expressed -
4 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
5 Sobic.004G257300 GPI-anchored protein, putative, expressed -
6 Sobic.001G017100 late embryogenesis abundant protein, putative, expressed -
7 Sobic.004G033000 glycosyltransferase, putative, expressed -
8 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
9 Sobic.003G127100 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
11 Sobic.004G285600 ethylene-responsive protein related, putative, expressed -
12 Sobic.003G373100 patellin protein, putative, expressed -
13 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
14 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
15 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
16 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
17 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
18 Sobic.010G030900 glycosyltransferase, putative, expressed -
19 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
20 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -


Gene co-expression network
sample Sobic006G081600 Sobic006G081600 Sobic010G008600 Sobic010G008600 Sobic006G081600--Sobic010G008600 Sobic002G372800 Sobic002G372800 Sobic006G081600--Sobic002G372800 Sobic009G073300 Sobic009G073300 Sobic006G081600--Sobic009G073300 Sobic002G270000 Sobic002G270000 Sobic006G081600--Sobic002G270000 Sobic004G257300 Sobic004G257300 Sobic006G081600--Sobic004G257300 Sobic001G017100 Sobic001G017100 Sobic006G081600--Sobic001G017100 Sobic004G033000 Sobic004G033000 Sobic006G081600--Sobic004G033000 Sobic004G212300 Sobic004G212300 Sobic006G081600--Sobic004G212300 Sobic003G127100 Sobic003G127100 Sobic006G081600--Sobic003G127100 Sobic010G008600--Sobic003G127100 Sobic010G101400 Sobic010G101400 Sobic010G008600--Sobic010G101400 Sobic004G264600 Sobic004G264600 Sobic010G008600--Sobic004G264600 Sobic010G030900 Sobic010G030900 Sobic010G008600--Sobic010G030900 Sobic009G194200 Sobic009G194200 Sobic010G008600--Sobic009G194200 Sobic001G063600 Sobic001G063600 Sobic010G008600--Sobic001G063600 Sobic001G061900 Sobic001G061900 Sobic010G008600--Sobic001G061900 Sobic001G476400 Sobic001G476400 Sobic010G008600--Sobic001G476400 Sobic010G008600--Sobic002G372800 Sobic007G009500 Sobic007G009500 Sobic002G372800--Sobic007G009500 Sobic002G372800--Sobic003G127100 Sobic001G108350 Sobic001G108350 Sobic002G372800--Sobic001G108350 Sobic004G257800 Sobic004G257800 Sobic002G372800--Sobic004G257800 Sobic005G110490 Sobic005G110490 Sobic002G372800--Sobic005G110490 Sobic002G372800--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic002G372800--Sobic002G325900 Sobic006G242100 Sobic006G242100 Sobic002G372800--Sobic006G242100 Sobic002G372800--Sobic010G008600 Sobic001G532200 Sobic001G532200 Sobic009G073300--Sobic001G532200 Sobic004G286600 Sobic004G286600 Sobic009G073300--Sobic004G286600 Sobic008G177800 Sobic008G177800 Sobic009G073300--Sobic008G177800 Sobic001G437000 Sobic001G437000 Sobic009G073300--Sobic001G437000 Sobic006G231100 Sobic006G231100 Sobic009G073300--Sobic006G231100 Sobic007G057100 Sobic007G057100 Sobic009G073300--Sobic007G057100 Sobic001G516600 Sobic001G516600 Sobic009G073300--Sobic001G516600 Sobic006G194100 Sobic006G194100 Sobic009G073300--Sobic006G194100 Sobic001G173300 Sobic001G173300 Sobic009G073300--Sobic001G173300 Sobic001G084100 Sobic001G084100 Sobic002G270000--Sobic001G084100 Sobic002G128800 Sobic002G128800 Sobic002G270000--Sobic002G128800 Sobic010G238800 Sobic010G238800 Sobic002G270000--Sobic010G238800 Sobic001G063500 Sobic001G063500 Sobic002G270000--Sobic001G063500 Sobic009G215000 Sobic009G215000 Sobic002G270000--Sobic009G215000 Sobic002G252000 Sobic002G252000 Sobic002G270000--Sobic002G252000 Sobic006G156000 Sobic006G156000 Sobic002G270000--Sobic006G156000 Sobic002G396400 Sobic002G396400 Sobic002G270000--Sobic002G396400 Sobic010G052200 Sobic010G052200 Sobic002G270000--Sobic010G052200 Sobic004G257300--Sobic001G173300 Sobic004G257300--Sobic010G030900 Sobic009G208800 Sobic009G208800 Sobic004G257300--Sobic009G208800 Sobic002G294700 Sobic002G294700 Sobic004G257300--Sobic002G294700 Sobic004G257300--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic004G257300--Sobic004G036600 Sobic006G205600 Sobic006G205600 Sobic004G257300--Sobic006G205600 Sobic004G257300--Sobic004G286600 Sobic001G489600 Sobic001G489600 Sobic004G257300--Sobic001G489600 Sobic001G017100--Sobic004G257300 Sobic001G017100--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G017100--Sobic007G151100 Sobic005G228900 Sobic005G228900 Sobic001G017100--Sobic005G228900 Sobic001G322200 Sobic001G322200 Sobic001G017100--Sobic001G322200 Sobic007G195800 Sobic007G195800 Sobic001G017100--Sobic007G195800 Sobic001G017100--Sobic004G286600 Sobic001G513700 Sobic001G513700 Sobic001G017100--Sobic001G513700 Sobic004G247200 Sobic004G247200 Sobic001G017100--Sobic004G247200 Sobic004G033000--Sobic006G081600 Sobic004G033000--Sobic010G008600 Sobic004G033000--Sobic003G127100 Sobic002G124700 Sobic002G124700 Sobic004G033000--Sobic002G124700 Sobic003G129400 Sobic003G129400 Sobic004G033000--Sobic003G129400 Sobic004G285600 Sobic004G285600 Sobic004G033000--Sobic004G285600 Sobic004G033000--Sobic002G372800 Sobic009G102600 Sobic009G102600 Sobic004G033000--Sobic009G102600 Sobic004G288700 Sobic004G288700 Sobic004G033000--Sobic004G288700 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic003G127100--Sobic010G008600 Sobic003G127100--Sobic002G372800 Sobic008G168100 Sobic008G168100 Sobic003G127100--Sobic008G168100 Sobic003G127100--Sobic010G101400 Sobic003G127100--Sobic006G242100 Sobic003G127100--Sobic001G063500 Sobic003G127100--Sobic006G081600 Sobic003G127100--Sobic004G033000 Sobic001G294400 Sobic001G294400 Sobic003G127100--Sobic001G294400
Octagon: transcription factors


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