Gene annotation
Transcriptome id Sobic.001G017100.2,Sobic.001G017100.5,Sobic.001G017100.4
Synonym Sb01g001660
Functional annotation late embryogenesis abundant protein, putative, expressed
UniProt A0A1B6QGW5
Pfam PF03168
Panther DB PTHR31459 PTHR31459:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44060 : Late embryogenesis abundant protein, group 2
RAP-DB (Rice) LOC_Os03g62620.4,LOC_Os03g62620.2 : late embryogenesis abundant protein, putative, expressed
MaizeGDB (Corn) Zm00025a008981
Brachypodium KQK12191 , KQK12192
Barley HORVU5Hr1G120230.15 , HORVU5Hr1G120230.14 , HORVU5Hr1G120230.11 , HORVU5Hr1G120230.10 , HORVU5Hr1G120230.13 , HORVU5Hr1G120230.12 , HORVU5Hr1G120230.9 , HORVU5Hr1G120230.8 , HORVU5Hr1G120230.1 , HORVU5Hr1G120230.3 , HORVU5Hr1G120230.2 , HORVU5Hr1G120230.5 , HORVU5Hr1G120230.4 , HORVU5Hr1G120230.7 , HORVU5Hr1G120230.6
Wheat TraesCS4A02G343300 , TraesCS4A02G343300 , TraesCS5D02G529700
Populus -


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cDNA sequences
Sobic.001G017100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G257300 GPI-anchored protein, putative, expressed -
2 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
3 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
4 Sobic.005G228900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.007G195800 uncharacterized protein family UPF0016 domain containing protein, expressed -
7 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
8 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
9 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
10 Sobic.006G205600 glycosyl hydrolases family 16, putative, expressed -
11 Sobic.006G194100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
12 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
13 Sobic.009G073300 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
15 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
16 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
17 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
18 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
19 Sobic.007G057100 expressed protein -
20 Sobic.002G214800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein


Gene co-expression network
sample Sobic001G017100 Sobic001G017100 Sobic004G257300 Sobic004G257300 Sobic001G017100--Sobic004G257300 Sobic001G173300 Sobic001G173300 Sobic001G017100--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G017100--Sobic007G151100 Sobic005G228900 Sobic005G228900 Sobic001G017100--Sobic005G228900 Sobic001G322200 Sobic001G322200 Sobic001G017100--Sobic001G322200 Sobic007G195800 Sobic007G195800 Sobic001G017100--Sobic007G195800 Sobic004G286600 Sobic004G286600 Sobic001G017100--Sobic004G286600 Sobic001G513700 Sobic001G513700 Sobic001G017100--Sobic001G513700 Sobic004G247200 Sobic004G247200 Sobic001G017100--Sobic004G247200 Sobic004G257300--Sobic001G173300 Sobic010G030900 Sobic010G030900 Sobic004G257300--Sobic010G030900 Sobic009G208800 Sobic009G208800 Sobic004G257300--Sobic009G208800 Sobic002G294700 Sobic002G294700 Sobic004G257300--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic004G257300--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic004G257300--Sobic004G036600 Sobic006G205600 Sobic006G205600 Sobic004G257300--Sobic006G205600 Sobic004G257300--Sobic004G286600 Sobic001G489600 Sobic001G489600 Sobic004G257300--Sobic001G489600 Sobic001G516600 Sobic001G516600 Sobic001G173300--Sobic001G516600 Sobic001G173300--Sobic004G257300 Sobic001G173300--Sobic004G036600 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic010G065900 Sobic010G065900 Sobic001G173300--Sobic010G065900 Sobic001G173300--Sobic007G151100 Sobic009G027900 Sobic009G027900 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100 Sobic007G151100--Sobic001G516600 Sobic003G158500 Sobic003G158500 Sobic007G151100--Sobic003G158500 Sobic002G356101 Sobic002G356101 Sobic007G151100--Sobic002G356101 Sobic001G538866 Sobic001G538866 Sobic007G151100--Sobic001G538866 Sobic005G028700 Sobic005G028700 Sobic007G151100--Sobic005G028700 Sobic002G140300 Sobic002G140300 Sobic007G151100--Sobic002G140300 Sobic002G245100 Sobic002G245100 Sobic007G151100--Sobic002G245100 Sobic007G151100--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic007G151100--Sobic002G036100 Sobic005G228900--Sobic007G151100 Sobic005G228900--Sobic002G356101 Sobic005G228900--Sobic004G247200 Sobic005G228900--Sobic005G028700 Sobic001G399100 Sobic001G399100 Sobic005G228900--Sobic001G399100 Sobic005G228900--Sobic001G538866 Sobic003G063200 Sobic003G063200 Sobic005G228900--Sobic003G063200 Sobic009G033700 Sobic009G033700 Sobic005G228900--Sobic009G033700 Sobic001G464900 Sobic001G464900 Sobic005G228900--Sobic001G464900 Sobic009G248500 Sobic009G248500 Sobic001G322200--Sobic009G248500 Sobic004G341800 Sobic004G341800 Sobic001G322200--Sobic004G341800 Sobic001G322200--Sobic009G027900 Sobic001G267600 Sobic001G267600 Sobic001G322200--Sobic001G267600 Sobic003G228900 Sobic003G228900 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic006G137800 Sobic006G137800 Sobic007G195800--Sobic006G137800 Sobic008G139600 Sobic008G139600 Sobic007G195800--Sobic008G139600 Sobic001G502900 Sobic001G502900 Sobic007G195800--Sobic001G502900 Sobic002G389400 Sobic002G389400 Sobic007G195800--Sobic002G389400 Sobic006G191800 Sobic006G191800 Sobic007G195800--Sobic006G191800 Sobic002G323300 Sobic002G323300 Sobic007G195800--Sobic002G323300 Sobic007G195800--Sobic004G065500 Sobic001G115300 Sobic001G115300 Sobic007G195800--Sobic001G115300 Sobic005G113300 Sobic005G113300 Sobic007G195800--Sobic005G113300 Sobic004G286600--Sobic008G177800 Sobic006G231100 Sobic006G231100 Sobic004G286600--Sobic006G231100 Sobic004G286600--Sobic002G294700 Sobic001G077700 Sobic001G077700 Sobic004G286600--Sobic001G077700 Sobic010G234600 Sobic010G234600 Sobic004G286600--Sobic010G234600 Sobic004G286600--Sobic002G036100 Sobic002G248100 Sobic002G248100 Sobic004G286600--Sobic002G248100 Sobic006G179500 Sobic006G179500 Sobic004G286600--Sobic006G179500 Sobic004G286600--Sobic002G140300 Sobic001G513700--Sobic008G177800 Sobic001G513700--Sobic007G151100 Sobic001G513700--Sobic002G036100 Sobic001G513700--Sobic001G516600 Sobic001G532200 Sobic001G532200 Sobic001G513700--Sobic001G532200 Sobic001G513700--Sobic006G231100 Sobic001G513700--Sobic002G294700 Sobic007G057100 Sobic007G057100 Sobic001G513700--Sobic007G057100 Sobic006G089300 Sobic006G089300 Sobic001G513700--Sobic006G089300 Sobic004G247200--Sobic003G063200 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic001G055600 Sobic001G055600 Sobic004G247200--Sobic001G055600 Sobic010G204600 Sobic010G204600 Sobic004G247200--Sobic010G204600 Sobic004G247200--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100
Octagon: transcription factors


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