Gene annotation
Transcriptome id Sobic.006G205600.1
Synonym XTH24, SEN4, MERI-5, MERI5B, Sb06g027670
Functional annotation glycosyl hydrolases family 16, putative, expressed
UniProt C5YFH5
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G30270 : xyloglucan endotransglucosylase/hydrolase 24
RAP-DB (Rice) LOC_Os04g51460.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a054957 , Zm00025a018308 , Zm00025a019784 , Zm00025a034364 , Zm00025a048260 , Zm00025a003233 , Zm00025a018310 , Zm00025a050765 , Zm00025a056955 , Zm00025a032745 , Zm00025a056957 , Zm00025a009908
Brachypodium KQK17339 , KQK17338 , KQJ84798 , KQJ94399 , KQJ84411 , KQJ84415 , KQJ97550 , KQK16264 , KQK17341 , KQJ95699 , KQJ95697
Barley HORVU1Hr1G087320.3 , HORVU1Hr1G087320.2 , HORVU1Hr1G087320.1 , HORVU2Hr1G108420.5 , HORVU2Hr1G014530.1 , HORVU2Hr1G111060.2 , HORVU2Hr1G111060.1 , HORVU2Hr1G014530.2 , HORVU6Hr1G081590.1 , HORVU2Hr1G045330.4 , HORVU6Hr1G081590.3 , HORVU6Hr1G081590.2 , HORVU6Hr1G081590.5 , HORVU6Hr1G081590.4 , HORVU7Hr1G081740.1 , HORVU2Hr1G108420.6 , HORVU7Hr1G098330.4 , HORVU7Hr1G098330.5 , HORVU7Hr1G098330.2 , HORVU2Hr1G110980.2 , HORVU2Hr1G110980.1 , HORVU7Hr1G098330.1 , HORVU2Hr1G101240.4 , HORVU2Hr1G101240.2 , HORVU2Hr1G101240.3 , HORVU7Hr1G098280.2 , HORVU7Hr1G098280.1 , HORVU7Hr1G098440.1 , HORVU7Hr1G098440.2 , HORVU7Hr1G098440.3 , HORVU7Hr1G098440.4 , HORVU7Hr1G098440.5 , HORVU7Hr1G098440.6 , HORVU2Hr1G014530.3 , HORVU7Hr1G098370.2 , HORVU7Hr1G098370.3 , HORVU7Hr1G098370.1 , HORVU7Hr1G098370.4 , HORVU2Hr1G111030.8 , HORVU2Hr1G111030.9 , HORVU2Hr1G111030.4 , HORVU2Hr1G111030.5 , HORVU2Hr1G111030.6 , HORVU2Hr1G111030.7 , HORVU2Hr1G111030.1 , HORVU2Hr1G111030.2 , HORVU2Hr1G111030.3 , HORVU7Hr1G098390.1 , HORVU7Hr1G098390.2 , HORVU7Hr1G098390.3 , HORVU7Hr1G098390.4 , HORVU2Hr1G108420.4 , HORVU2Hr1G045330.5 , HORVU2Hr1G045330.7 , HORVU2Hr1G045330.6 , HORVU2Hr1G101170.1 , HORVU2Hr1G045330.3
Wheat TraesCS6D02G318500 , TraesCS2A02G498200 , TraesCS7D02G418600 , TraesCS7D02G418600 , TraesCS7D02G418600 , TraesCS2A02G498400 , TraesCS7B02G326900 , TraesCS7B02G327200 , TraesCS7D02G419300 , TraesCS2D02G498400 , TraesCS1A02G396200 , TraesCS1D02G404300 , TraesCS2B02G526600 , TraesCS2B02G526500 , TraesCS7B02G327400 , TraesCS7A02G363000 , TraesCS2A02G484100 , TraesCS2A02G484100 , TraesCS7B02G327700 , TraesCS7D02G339400 , TraesCS7B02G265000 , TraesCS2D02G086800 , TraesCS7B02G265000 , TraesCS7B02G327000 , TraesCS6B02G368300 , TraesCS7A02G426900 , TraesCS2D02G498500 , TraesCS2D02G498600 , TraesCS7B02G242900 , TraesCS7A02G427600 , TraesCS1B02G424500 , TraesCS7A02G426100 , TraesCS7D02G418700 , TraesCS2A02G089000 , TraesCS2A02G433800 , TraesCS7A02G427000 , TraesCS7B02G327500 , TraesCS2B02G104700 , TraesCS7D02G419200 , TraesCS7D02G419600 , TraesCS7A02G427100 , TraesCS2D02G484000 , TraesCS2B02G454800 , TraesCS7D02G419400 , TraesCS2D02G484000 , TraesCS7A02G426600 , TraesCS7A02G426700 , TraesCS7A02G427300 , TraesCS2D02G498700 , TraesCS7A02G427200 , TraesCS7D02G419900 , TraesCS2A02G498300 , TraesCS2D02G431800 , TraesCS2D02G498800 , TraesCS7A02G331200 , TraesCS2B02G510200 , TraesCS2B02G510200
Populus -


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cDNA sequences
Sobic.006G205600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G321800 OsRhmbd7 - Putative Rhomboid homologue, expressed -
2 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.004G257300 GPI-anchored protein, putative, expressed -
4 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
5 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
7 Sobic.005G037000 cytochrome P450, putative, expressed -
8 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
9 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
10 Sobic.006G194100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
11 Sobic.010G030900 glycosyltransferase, putative, expressed -
12 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.001G489600 expressed protein -
14 Sobic.001G476400 - -
15 Sobic.004G319700 ethylene-responsive transcription factor, putative, expressed -
16 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
17 Sobic.003G153300 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
18 Sobic.001G017100 late embryogenesis abundant protein, putative, expressed -
19 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
20 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -


Gene co-expression network
sample Sobic006G205600 Sobic006G205600 Sobic001G321800 Sobic001G321800 Sobic006G205600--Sobic001G321800 Sobic001G209800 Sobic001G209800 Sobic006G205600--Sobic001G209800 Sobic004G257300 Sobic004G257300 Sobic006G205600--Sobic004G257300 Sobic001G322200 Sobic001G322200 Sobic006G205600--Sobic001G322200 Sobic004G280900 Sobic004G280900 Sobic006G205600--Sobic004G280900 Sobic006G231100 Sobic006G231100 Sobic006G205600--Sobic006G231100 Sobic005G037000 Sobic005G037000 Sobic006G205600--Sobic005G037000 Sobic001G077400 Sobic001G077400 Sobic006G205600--Sobic001G077400 Sobic001G173300 Sobic001G173300 Sobic006G205600--Sobic001G173300 Sobic001G321800--Sobic006G205600 Sobic001G321800--Sobic004G257300 Sobic001G321800--Sobic001G209800 Sobic010G030900 Sobic010G030900 Sobic001G321800--Sobic010G030900 Sobic001G476400 Sobic001G476400 Sobic001G321800--Sobic001G476400 Sobic001G464900 Sobic001G464900 Sobic001G321800--Sobic001G464900 Sobic007G223200 Sobic007G223200 Sobic001G321800--Sobic007G223200 Sobic006G110000 Sobic006G110000 Sobic001G321800--Sobic006G110000 Sobic001G473900 Sobic001G473900 Sobic001G321800--Sobic001G473900 Sobic001G209800--Sobic001G077400 Sobic001G209800--Sobic004G280900 Sobic009G217600 Sobic009G217600 Sobic001G209800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G209800--Sobic001G035000 Sobic001G209800--Sobic005G037000 Sobic001G441100 Sobic001G441100 Sobic001G209800--Sobic001G441100 Sobic010G076600 Sobic010G076600 Sobic001G209800--Sobic010G076600 Sobic001G341600 Sobic001G341600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic004G257300--Sobic001G173300 Sobic004G257300--Sobic010G030900 Sobic009G208800 Sobic009G208800 Sobic004G257300--Sobic009G208800 Sobic002G294700 Sobic002G294700 Sobic004G257300--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic004G257300--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic004G257300--Sobic004G036600 Sobic004G257300--Sobic006G205600 Sobic004G286600 Sobic004G286600 Sobic004G257300--Sobic004G286600 Sobic001G489600 Sobic001G489600 Sobic004G257300--Sobic001G489600 Sobic009G248500 Sobic009G248500 Sobic001G322200--Sobic009G248500 Sobic004G341800 Sobic004G341800 Sobic001G322200--Sobic004G341800 Sobic009G027900 Sobic009G027900 Sobic001G322200--Sobic009G027900 Sobic001G267600 Sobic001G267600 Sobic001G322200--Sobic001G267600 Sobic003G228900 Sobic003G228900 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic004G280900--Sobic001G077400 Sobic004G280900--Sobic005G037000 Sobic004G280900--Sobic009G217600 Sobic004G280900--Sobic001G209800 Sobic004G280900--Sobic001G441100 Sobic002G036100 Sobic002G036100 Sobic004G280900--Sobic002G036100 Sobic002G140300 Sobic002G140300 Sobic004G280900--Sobic002G140300 Sobic001G538866 Sobic001G538866 Sobic004G280900--Sobic001G538866 Sobic004G280900--Sobic001G341600 Sobic006G231100--Sobic008G177800 Sobic006G230900 Sobic006G230900 Sobic006G231100--Sobic006G230900 Sobic006G231200 Sobic006G231200 Sobic006G231100--Sobic006G231200 Sobic010G217800 Sobic010G217800 Sobic006G231100--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic006G231100--Sobic002G415600 Sobic010G234600 Sobic010G234600 Sobic006G231100--Sobic010G234600 Sobic006G231100--Sobic004G286600 Sobic006G231100--Sobic002G294700 Sobic002G282300 Sobic002G282300 Sobic006G231100--Sobic002G282300 Sobic005G037000--Sobic001G077400 Sobic005G037000--Sobic004G280900 Sobic005G037000--Sobic001G441100 Sobic005G037000--Sobic001G035000 Sobic005G037000--Sobic001G209800 Sobic005G037000--Sobic009G217600 Sobic007G126300 Sobic007G126300 Sobic005G037000--Sobic007G126300 Sobic001G259600 Sobic001G259600 Sobic005G037000--Sobic001G259600 Sobic006G165100 Sobic006G165100 Sobic005G037000--Sobic006G165100 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G077400--Sobic001G035000 Sobic001G077400--Sobic002G036100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600 Sobic001G516600 Sobic001G516600 Sobic001G173300--Sobic001G516600 Sobic001G173300--Sobic004G257300 Sobic001G173300--Sobic004G036600 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic010G065900 Sobic010G065900 Sobic001G173300--Sobic010G065900 Sobic007G151100 Sobic007G151100 Sobic001G173300--Sobic007G151100 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100
Octagon: transcription factors


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